Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148441.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2805169 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17928 | 0.6391058791823238 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10589 | 0.3774817132229823 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 9916 | 0.35349028882038835 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 9311 | 0.3319229607913106 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8122 | 0.2895369227308586 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4520 | 0.16113111188666351 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 4461 | 0.1590278517978774 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 4050 | 0.144376328128537 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 4042 | 0.14409114031988804 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 3992 | 0.14230871651583202 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 3760 | 0.13403827006501212 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 3372 | 0.12020666134553747 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 3251 | 0.11589319573972193 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 3000 | 0.10694542824336074 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCATA | 260 | 0.0 | 38.878925 | 7 |
GGGTTAG | 1085 | 0.0 | 36.749184 | 1 |
GGTTAGA | 1190 | 0.0 | 33.479733 | 2 |
GTTAGAG | 1175 | 0.0 | 33.40106 | 3 |
CATGGGG | 9880 | 0.0 | 32.259827 | 4 |
ATGGGGG | 7140 | 0.0 | 32.230488 | 5 |
TGGGGGG | 5915 | 0.0 | 29.957129 | 6 |
TACAACG | 430 | 0.0 | 29.040558 | 2 |
AACGCAT | 355 | 0.0 | 28.474703 | 6 |
TTAGAGC | 1480 | 0.0 | 27.72308 | 4 |
ATATGTA | 1575 | 0.0 | 26.827513 | 1 |
CGCATAG | 355 | 0.0 | 26.79972 | 8 |
TATGTAA | 1705 | 0.0 | 26.505947 | 2 |
TAGAGCA | 1675 | 0.0 | 25.915655 | 5 |
ACAACGC | 535 | 0.0 | 25.563963 | 3 |
GTTAAGA | 2725 | 0.0 | 25.531334 | 4 |
TATCACG | 290 | 1.4733814E-10 | 24.605795 | 2 |
GGTTAAG | 2415 | 0.0 | 24.37655 | 3 |
CATGGGT | 3335 | 0.0 | 23.535976 | 4 |
GTACATT | 1325 | 0.0 | 23.35555 | 1 |