FastQCFastQC Report
Fri 10 Feb 2017
ERR1148441.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148441.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2805169
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT179280.6391058791823238No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT105890.3774817132229823No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA99160.35349028882038835No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT93110.3319229607913106No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT81220.2895369227308586No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT45200.16113111188666351No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG44610.1590278517978774No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC40500.144376328128537No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA40420.14409114031988804No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG39920.14230871651583202No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT37600.13403827006501212No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC33720.12020666134553747No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC32510.11589319573972193No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC30000.10694542824336074No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCATA2600.038.8789257
GGGTTAG10850.036.7491841
GGTTAGA11900.033.4797332
GTTAGAG11750.033.401063
CATGGGG98800.032.2598274
ATGGGGG71400.032.2304885
TGGGGGG59150.029.9571296
TACAACG4300.029.0405582
AACGCAT3550.028.4747036
TTAGAGC14800.027.723084
ATATGTA15750.026.8275131
CGCATAG3550.026.799728
TATGTAA17050.026.5059472
TAGAGCA16750.025.9156555
ACAACGC5350.025.5639633
GTTAAGA27250.025.5313344
TATCACG2901.4733814E-1024.6057952
GGTTAAG24150.024.376553
CATGGGT33350.023.5359764
GTACATT13250.023.355551