Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148402.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1522969 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8908 | 0.5849101327735495 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5907 | 0.3878608166023077 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 5028 | 0.33014460570110093 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 4726 | 0.31031491776917325 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4320 | 0.2836564631322108 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2280 | 0.1497075777642224 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 2171 | 0.14255050496759947 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 2095 | 0.13756025237545874 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 2039 | 0.13388322414967083 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 1823 | 0.11970040099306026 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 1670 | 0.10965423459046114 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 1600 | 0.10505794930822623 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 1552 | 0.10190621082897945 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 1542 | 0.10124959864580302 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CATGGGG | 4775 | 0.0 | 31.13296 | 4 |
ATGGGGG | 3150 | 0.0 | 30.392687 | 5 |
TGGGGGG | 2425 | 0.0 | 29.915884 | 6 |
GGGTTAG | 525 | 0.0 | 26.067135 | 1 |
CATGGGT | 1610 | 0.0 | 25.484549 | 4 |
TATAACG | 155 | 2.1153675E-4 | 23.018303 | 2 |
GGTTAGA | 550 | 0.0 | 22.704418 | 2 |
GGTTAAG | 1025 | 0.0 | 22.045172 | 3 |
GTAGCGT | 135 | 0.0025646698 | 22.023685 | 3 |
ACATGGG | 18360 | 0.0 | 21.926523 | 3 |
TTAACGC | 190 | 3.3220404E-5 | 21.907772 | 4 |
GTAAGTA | 1070 | 0.0 | 21.673777 | 2 |
GAGTACT | 7810 | 0.0 | 21.01415 | 12-13 |
TACATGG | 21105 | 0.0 | 20.906067 | 2 |
GTACATG | 21130 | 0.0 | 20.809887 | 1 |
GTATCAA | 20065 | 0.0 | 20.787565 | 1 |
AACGCAG | 20330 | 0.0 | 20.767046 | 6 |
GTACCGT | 175 | 4.8039932E-4 | 20.38764 | 6 |
TTAGAGC | 650 | 0.0 | 20.12626 | 4 |
GTGTTAT | 505 | 0.0 | 20.030062 | 1 |