Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148400.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2127155 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14515 | 0.6823668232921437 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8845 | 0.4158136101976584 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6466 | 0.3039740874548399 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3643 | 0.1712616146919242 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 3039 | 0.14286688088080088 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 2547 | 0.1197373957233958 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 2198 | 0.10333050482922025 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCATA | 235 | 0.0 | 45.548527 | 7 |
AACGCAT | 260 | 0.0 | 43.456017 | 6 |
GTATCAA | 19370 | 0.0 | 31.892208 | 1 |
ATGGGGG | 4645 | 0.0 | 29.957104 | 5 |
CGCATAG | 320 | 0.0 | 29.733065 | 8 |
AACGCAG | 20850 | 0.0 | 29.091343 | 6 |
CATGGGG | 7190 | 0.0 | 28.20299 | 4 |
TATCAAC | 22270 | 0.0 | 27.583525 | 2 |
ATCAACG | 22265 | 0.0 | 27.563011 | 3 |
TCAACGC | 22495 | 0.0 | 27.386934 | 4 |
CAACGCA | 22820 | 0.0 | 26.970835 | 5 |
TATGTAA | 1290 | 0.0 | 26.736708 | 2 |
ATATGTA | 1230 | 0.0 | 26.611814 | 1 |
TGGGGGG | 3745 | 0.0 | 26.517607 | 6 |
ACGCAGA | 23695 | 0.0 | 25.472935 | 7 |
CGCAGAG | 23975 | 0.0 | 25.150637 | 8 |
TATCACG | 190 | 1.1748161E-6 | 25.03837 | 2 |
GGTATCA | 13755 | 0.0 | 24.878496 | 1 |
GTACATG | 21015 | 0.0 | 24.723032 | 1 |
ACATGGG | 19995 | 0.0 | 24.714355 | 3 |