FastQCFastQC Report
Fri 10 Feb 2017
ERR1148400.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148400.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2127155
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT145150.6823668232921437No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT88450.4158136101976584No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64660.3039740874548399No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36430.1712616146919242No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA30390.14286688088080088No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT25470.1197373957233958No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC21980.10333050482922025No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCATA2350.045.5485277
AACGCAT2600.043.4560176
GTATCAA193700.031.8922081
ATGGGGG46450.029.9571045
CGCATAG3200.029.7330658
AACGCAG208500.029.0913436
CATGGGG71900.028.202994
TATCAAC222700.027.5835252
ATCAACG222650.027.5630113
TCAACGC224950.027.3869344
CAACGCA228200.026.9708355
TATGTAA12900.026.7367082
ATATGTA12300.026.6118141
TGGGGGG37450.026.5176076
ACGCAGA236950.025.4729357
CGCAGAG239750.025.1506378
TATCACG1901.1748161E-625.038372
GGTATCA137550.024.8784961
GTACATG210150.024.7230321
ACATGGG199950.024.7143553