Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148393.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1180093 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10944 | 0.927384536642451 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7230 | 0.612663578209514 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5252 | 0.4450496698141587 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 4105 | 0.3478539403250422 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 3051 | 0.2585389456593675 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2898 | 0.2455738657885438 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 1949 | 0.1651564749557874 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 1724 | 0.14609018102810542 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 1579 | 0.13380301383026594 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 1497 | 0.1268544089321774 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 1431 | 0.12126162938005734 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 1367 | 0.11583832799618335 | No Hit |
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1307 | 0.1107539829488015 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1281 | 0.10855076676160268 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 1254 | 0.10626281149028086 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG | 1222 | 0.10355116079834385 | No Hit |
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA | 1194 | 0.10117846644289899 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCATA | 140 | 8.112693E-8 | 33.9777 | 7 |
ATGGGGG | 2970 | 0.0 | 33.834698 | 5 |
TGGGGGG | 2320 | 0.0 | 33.31865 | 6 |
CATGGGG | 4610 | 0.0 | 32.632595 | 4 |
GGTTAAG | 905 | 0.0 | 32.19434 | 3 |
GTTAAGA | 1000 | 0.0 | 30.919706 | 4 |
CTACGCA | 175 | 1.6822014E-8 | 30.579931 | 4 |
TACAACG | 175 | 1.6822014E-8 | 30.579931 | 2 |
AGCGTCA | 215 | 1.2187229E-10 | 30.421892 | 3 |
GTGGTTA | 820 | 0.0 | 29.751919 | 1 |
TATCACG | 80 | 0.005379485 | 29.73049 | 2 |
GGTTTCA | 565 | 0.0 | 29.488628 | 1 |
TTAACGC | 165 | 3.4275035E-7 | 28.829565 | 4 |
ATATGTA | 625 | 0.0 | 28.561842 | 1 |
TATAACG | 125 | 4.904606E-5 | 28.541267 | 2 |
TACGCAG | 190 | 3.741843E-8 | 28.165726 | 5 |
AACGCAT | 170 | 4.4502667E-7 | 27.981638 | 6 |
ATTAACG | 175 | 5.7334E-7 | 27.182161 | 3 |
TATGTAA | 635 | 0.0 | 26.219015 | 2 |
TCTACGC | 205 | 7.81929E-8 | 26.104818 | 3 |