FastQCFastQC Report
Fri 10 Feb 2017
ERR1148393.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148393.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1180093
Sequences flagged as poor quality0
Sequence length125
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT109440.927384536642451No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72300.612663578209514No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52520.4450496698141587No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA41050.3478539403250422No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT30510.2585389456593675No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28980.2455738657885438No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG19490.1651564749557874No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT17240.14609018102810542No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG15790.13380301383026594No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC14970.1268544089321774No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC14310.12126162938005734No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC13670.11583832799618335No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA13070.1107539829488015No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12810.10855076676160268No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT12540.10626281149028086No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG12220.10355116079834385No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA11940.10117846644289899No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCATA1408.112693E-833.97777
ATGGGGG29700.033.8346985
TGGGGGG23200.033.318656
CATGGGG46100.032.6325954
GGTTAAG9050.032.194343
GTTAAGA10000.030.9197064
CTACGCA1751.6822014E-830.5799314
TACAACG1751.6822014E-830.5799312
AGCGTCA2151.2187229E-1030.4218923
GTGGTTA8200.029.7519191
TATCACG800.00537948529.730492
GGTTTCA5650.029.4886281
TTAACGC1653.4275035E-728.8295654
ATATGTA6250.028.5618421
TATAACG1254.904606E-528.5412672
TACGCAG1903.741843E-828.1657265
AACGCAT1704.4502667E-727.9816386
ATTAACG1755.7334E-727.1821613
TATGTAA6350.026.2190152
TCTACGC2057.81929E-826.1048183