Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148375.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2770691 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22215 | 0.8017855473598463 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 13581 | 0.49016653246428415 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13021 | 0.4699549679123367 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 12021 | 0.4338628883552876 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7398 | 0.26700920456304944 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 5689 | 0.2053278406000525 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC | 5441 | 0.1963770048699043 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 5201 | 0.1877149057762125 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 4897 | 0.17674291359086958 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA | 4699 | 0.16959668183857385 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC | 4331 | 0.15631479656157976 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4110 | 0.1483384469794719 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 3271 | 0.1180571922311077 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 3242 | 0.11701052192395327 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 3044 | 0.10986429017165755 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC | 3033 | 0.10946727729653 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG | 3019 | 0.10896198818273133 | No Hit |
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA | 2848 | 0.10279024257847591 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGGGGG | 6075 | 0.0 | 33.677982 | 5 |
GGGTTAG | 1100 | 0.0 | 33.542812 | 1 |
CATGGGG | 9395 | 0.0 | 32.28548 | 4 |
GTGGTTA | 1455 | 0.0 | 30.266985 | 1 |
TGGGGGG | 4770 | 0.0 | 30.173862 | 6 |
TAACGCA | 415 | 0.0 | 30.095743 | 4 |
GTTAAGA | 1965 | 0.0 | 29.661793 | 4 |
GTTAGAG | 1235 | 0.0 | 28.8947 | 3 |
GGTTAGA | 1280 | 0.0 | 27.413233 | 2 |
TATAACG | 375 | 0.0 | 26.96099 | 2 |
TAGAGCA | 1395 | 0.0 | 26.4333 | 5 |
ATATGTA | 1405 | 0.0 | 25.837708 | 1 |
GGTTAAG | 1960 | 0.0 | 25.792696 | 3 |
GTACATT | 1125 | 0.0 | 25.391546 | 1 |
TTAGAGC | 1415 | 0.0 | 25.21905 | 4 |
TATGTAA | 1460 | 0.0 | 24.848213 | 2 |
TACAACG | 360 | 0.0 | 24.780323 | 2 |
TATCACG | 290 | 1.4733814E-10 | 24.609425 | 2 |
GAGTACT | 16005 | 0.0 | 23.949759 | 12-13 |
AACGCAG | 46215 | 0.0 | 23.447649 | 6 |