FastQCFastQC Report
Fri 10 Feb 2017
ERR1148375.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148375.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2770691
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT222150.8017855473598463No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA135810.49016653246428415No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT130210.4699549679123367No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT120210.4338628883552876No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73980.26700920456304944No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG56890.2053278406000525No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC54410.1963770048699043No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG52010.1877149057762125No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT48970.17674291359086958No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA46990.16959668183857385No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC43310.15631479656157976No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41100.1483384469794719No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC32710.1180571922311077No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC32420.11701052192395327No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT30440.10986429017165755No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC30330.10946727729653No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG30190.10896198818273133No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA28480.10279024257847591No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGGG60750.033.6779825
GGGTTAG11000.033.5428121
CATGGGG93950.032.285484
GTGGTTA14550.030.2669851
TGGGGGG47700.030.1738626
TAACGCA4150.030.0957434
GTTAAGA19650.029.6617934
GTTAGAG12350.028.89473
GGTTAGA12800.027.4132332
TATAACG3750.026.960992
TAGAGCA13950.026.43335
ATATGTA14050.025.8377081
GGTTAAG19600.025.7926963
GTACATT11250.025.3915461
TTAGAGC14150.025.219054
TATGTAA14600.024.8482132
TACAACG3600.024.7803232
TATCACG2901.4733814E-1024.6094252
GAGTACT160050.023.94975912-13
AACGCAG462150.023.4476496