Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148332.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2484543 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15174 | 0.6107360589049978 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9720 | 0.39121882776832595 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7428 | 0.2989684622081405 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA | 6045 | 0.24330430183740026 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 5350 | 0.21533135067495307 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3779 | 0.15210040639264444 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 3044 | 0.12251750120645931 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG | 2828 | 0.11382374947827428 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 2642 | 0.10633746326789273 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG | 2498 | 0.10054162878243605 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 190 | 2.910383E-11 | 34.432274 | 2 |
ATGGGGG | 6235 | 0.0 | 32.62243 | 5 |
CATGGGG | 9010 | 0.0 | 31.882248 | 4 |
GCGTATC | 135 | 2.3264147E-6 | 30.861313 | 1 |
TATCACG | 180 | 2.2100721E-8 | 29.736965 | 2 |
TGGGGGG | 5100 | 0.0 | 29.38712 | 6 |
GGGTTAG | 1140 | 0.0 | 27.670763 | 1 |
TAACGCA | 305 | 0.0 | 27.299507 | 4 |
GTTAAGA | 2130 | 0.0 | 26.805151 | 4 |
GGTTAAG | 1975 | 0.0 | 24.692972 | 3 |
GGTTAGA | 1400 | 0.0 | 24.639198 | 2 |
GTATCAA | 28270 | 0.0 | 24.569435 | 1 |
GTGGTTA | 1505 | 0.0 | 24.519144 | 1 |
GTAAGTA | 2165 | 0.0 | 24.448868 | 2 |
ACAACGC | 395 | 0.0 | 24.090706 | 3 |
ATATGTA | 1315 | 0.0 | 23.988344 | 1 |
GTTAGAG | 1390 | 0.0 | 23.532848 | 3 |
TACAACG | 330 | 2.910383E-11 | 23.429123 | 2 |
AACGCAG | 29615 | 0.0 | 23.416039 | 6 |
TGTAAGT | 2270 | 0.0 | 22.810957 | 1 |