Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148171.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 706259 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2326 | 0.32934093583232216 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1337 | 0.18930732210138207 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1189 | 0.1683518369323435 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 1885 | 0.0 | 53.065563 | 1 |
GGTATCA | 1070 | 0.0 | 51.750435 | 1 |
TCAACGC | 2365 | 0.0 | 41.493057 | 4 |
ATCAACG | 2370 | 0.0 | 41.405518 | 3 |
CAACGCA | 2405 | 0.0 | 40.80294 | 5 |
AACGCAG | 2405 | 0.0 | 40.555653 | 6 |
TATCAAC | 2650 | 0.0 | 37.482105 | 2 |
ACGCAGA | 2785 | 0.0 | 34.80848 | 7 |
CGCAGAG | 2960 | 0.0 | 32.750546 | 8 |
GTACATG | 3120 | 0.0 | 30.533758 | 1 |
GCAGAGT | 3275 | 0.0 | 29.600492 | 9 |
TACATGG | 3220 | 0.0 | 29.36937 | 2 |
CTATTAC | 205 | 2.404704E-9 | 29.044304 | 1 |
ACATGGG | 3270 | 0.0 | 28.554499 | 3 |
GTACTAG | 130 | 6.3451254E-5 | 27.48038 | 1 |
GAGTACT | 1315 | 0.0 | 27.136145 | 12-13 |
AGAGTAC | 2975 | 0.0 | 25.888412 | 10-11 |
GGATAAG | 280 | 9.276846E-11 | 25.517496 | 1 |
CATGGGG | 1825 | 0.0 | 25.41876 | 4 |
CAGAGTA | 3090 | 0.0 | 24.828691 | 10-11 |