FastQCFastQC Report
Fri 10 Feb 2017
ERR1148171.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148171.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences706259
Sequences flagged as poor quality0
Sequence length125
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23260.32934093583232216No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13370.18930732210138207No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11890.1683518369323435No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA18850.053.0655631
GGTATCA10700.051.7504351
TCAACGC23650.041.4930574
ATCAACG23700.041.4055183
CAACGCA24050.040.802945
AACGCAG24050.040.5556536
TATCAAC26500.037.4821052
ACGCAGA27850.034.808487
CGCAGAG29600.032.7505468
GTACATG31200.030.5337581
GCAGAGT32750.029.6004929
TACATGG32200.029.369372
CTATTAC2052.404704E-929.0443041
ACATGGG32700.028.5544993
GTACTAG1306.3451254E-527.480381
GAGTACT13150.027.13614512-13
AGAGTAC29750.025.88841210-11
GGATAAG2809.276846E-1125.5174961
CATGGGG18250.025.418764
CAGAGTA30900.024.82869110-11