Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148165.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1623914 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6923 | 0.42631567927858244 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3593 | 0.22125555909980454 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3554 | 0.21885395408870173 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1860 | 0.0 | 69.15709 | 1 |
GTATCAA | 4380 | 0.0 | 67.02993 | 1 |
TCAACGC | 5830 | 0.0 | 49.381504 | 4 |
CAACGCA | 6055 | 0.0 | 47.644753 | 5 |
ATCAACG | 6095 | 0.0 | 47.332073 | 3 |
AACGCAG | 6120 | 0.0 | 46.944336 | 6 |
TATCAAC | 6230 | 0.0 | 46.50453 | 2 |
ACGCAGA | 7085 | 0.0 | 40.466408 | 7 |
CGCAGAG | 7335 | 0.0 | 39.006092 | 8 |
GCAGAGT | 8060 | 0.0 | 35.34988 | 9 |
GTACATG | 7610 | 0.0 | 34.901665 | 1 |
TACATGG | 7795 | 0.0 | 33.73343 | 2 |
ACATGGG | 7825 | 0.0 | 33.142834 | 3 |
AGAGTAC | 7590 | 0.0 | 29.897871 | 10-11 |
CATGGGG | 5050 | 0.0 | 28.97552 | 4 |
ATGGGGG | 3175 | 0.0 | 26.977785 | 5 |
AGTACTT | 3885 | 0.0 | 26.717258 | 12-13 |
CAGAGTA | 8025 | 0.0 | 25.868298 | 10-11 |
CATGGGT | 1410 | 0.0 | 25.733461 | 4 |
GAGTACT | 3655 | 0.0 | 25.38778 | 12-13 |