Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148164.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2196680 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8545 | 0.3889961214195969 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4516 | 0.20558297066482148 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4313 | 0.19634175209862154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 6360 | 0.0 | 63.674267 | 1 |
GGTATCA | 2910 | 0.0 | 56.075054 | 1 |
AACGCAG | 8465 | 0.0 | 47.22584 | 6 |
TCAACGC | 8470 | 0.0 | 47.197964 | 4 |
CAACGCA | 8635 | 0.0 | 46.433876 | 5 |
ATCAACG | 8745 | 0.0 | 45.64572 | 3 |
TATCAAC | 9330 | 0.0 | 43.107403 | 2 |
ACGCAGA | 9970 | 0.0 | 40.096962 | 7 |
CGCAGAG | 10360 | 0.0 | 38.702362 | 8 |
GCAGAGT | 11650 | 0.0 | 34.774315 | 9 |
GTACATG | 10575 | 0.0 | 31.593273 | 1 |
TACATGG | 10935 | 0.0 | 30.414442 | 2 |
ACATGGG | 10880 | 0.0 | 29.90858 | 3 |
AGAGTAC | 10635 | 0.0 | 29.870407 | 10-11 |
CATGGGG | 6475 | 0.0 | 27.838142 | 4 |
AGTACTT | 5210 | 0.0 | 25.74816 | 12-13 |
CAGAGTA | 11280 | 0.0 | 25.156296 | 10-11 |
GAGTACT | 4845 | 0.0 | 24.618294 | 12-13 |
CGTATAG | 200 | 1.8127066E-6 | 23.821667 | 1 |
AGTACAT | 7990 | 0.0 | 23.080875 | 12-13 |