Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148150.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2220918 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9453 | 0.4256348050670939 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5218 | 0.2349478909171793 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5009 | 0.22553736788120948 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 7585 | 0.0 | 55.896736 | 1 |
GGTATCA | 4005 | 0.0 | 45.348125 | 1 |
AACGCAG | 9720 | 0.0 | 42.776314 | 6 |
TCAACGC | 9875 | 0.0 | 42.225365 | 4 |
ATCAACG | 10075 | 0.0 | 41.387142 | 3 |
CAACGCA | 10100 | 0.0 | 41.2847 | 5 |
TATCAAC | 10525 | 0.0 | 39.791645 | 2 |
ACGCAGA | 11175 | 0.0 | 37.206783 | 7 |
CGCAGAG | 11495 | 0.0 | 36.22276 | 8 |
GCAGAGT | 12340 | 0.0 | 33.790558 | 9 |
GTACATG | 11935 | 0.0 | 32.829597 | 1 |
ACATGGG | 11625 | 0.0 | 32.287086 | 3 |
TACATGG | 12075 | 0.0 | 32.072678 | 2 |
CATGGGG | 6635 | 0.0 | 29.584583 | 4 |
AGAGTAC | 11870 | 0.0 | 28.363394 | 10-11 |
ATGGGGG | 3330 | 0.0 | 26.07961 | 5 |
GAGTACT | 5315 | 0.0 | 25.628588 | 12-13 |
AGTACTT | 5915 | 0.0 | 25.241283 | 12-13 |
CAGAGTA | 12175 | 0.0 | 24.574884 | 10-11 |
TGGGGGG | 2675 | 0.0 | 23.79318 | 6 |