FastQCFastQC Report
Fri 10 Feb 2017
ERR1148150.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148150.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2220918
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT94530.4256348050670939No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52180.2349478909171793No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50090.22553736788120948No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA75850.055.8967361
GGTATCA40050.045.3481251
AACGCAG97200.042.7763146
TCAACGC98750.042.2253654
ATCAACG100750.041.3871423
CAACGCA101000.041.28475
TATCAAC105250.039.7916452
ACGCAGA111750.037.2067837
CGCAGAG114950.036.222768
GCAGAGT123400.033.7905589
GTACATG119350.032.8295971
ACATGGG116250.032.2870863
TACATGG120750.032.0726782
CATGGGG66350.029.5845834
AGAGTAC118700.028.36339410-11
ATGGGGG33300.026.079615
GAGTACT53150.025.62858812-13
AGTACTT59150.025.24128312-13
CAGAGTA121750.024.57488410-11
TGGGGGG26750.023.793186