Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148138.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3521424 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12470 | 0.3541181067658993 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6434 | 0.18271017633775427 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6063 | 0.17217466570341997 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 9975 | 0.0 | 54.74026 | 1 |
GGTATCA | 5325 | 0.0 | 44.84099 | 1 |
AACGCAG | 12175 | 0.0 | 43.728687 | 6 |
TCAACGC | 12535 | 0.0 | 42.852467 | 4 |
ATCAACG | 12800 | 0.0 | 42.1047 | 3 |
CAACGCA | 12855 | 0.0 | 41.73946 | 5 |
TATCAAC | 13890 | 0.0 | 39.06143 | 2 |
ACGCAGA | 13840 | 0.0 | 38.467976 | 7 |
CGCAGAG | 14170 | 0.0 | 37.57211 | 8 |
GCAGAGT | 16115 | 0.0 | 33.221912 | 9 |
GTACATG | 13930 | 0.0 | 31.418585 | 1 |
ACATGGG | 13815 | 0.0 | 30.700891 | 3 |
TACATGG | 14670 | 0.0 | 29.52275 | 2 |
AGAGTAC | 14915 | 0.0 | 29.274212 | 10-11 |
CATGGGG | 7545 | 0.0 | 27.121367 | 4 |
AGTACTT | 8975 | 0.0 | 24.987297 | 12-13 |
CAGAGTA | 15570 | 0.0 | 24.852556 | 10-11 |
GAGTACT | 7785 | 0.0 | 24.145758 | 12-13 |
CGTATAC | 230 | 2.3720713E-7 | 23.277004 | 3 |
CATGGGT | 3205 | 0.0 | 22.829136 | 4 |