Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148102.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2646970 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13788 | 0.5208974790042955 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7417 | 0.28020718028538294 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6962 | 0.2630177145944231 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 9485 | 0.0 | 65.48315 | 1 |
GGTATCA | 4290 | 0.0 | 58.300808 | 1 |
AACGCAG | 12985 | 0.0 | 47.370693 | 6 |
TCAACGC | 13010 | 0.0 | 47.325386 | 4 |
ATCAACG | 13025 | 0.0 | 47.225212 | 3 |
CAACGCA | 13305 | 0.0 | 46.320797 | 5 |
TATCAAC | 13625 | 0.0 | 45.62929 | 2 |
ACGCAGA | 15175 | 0.0 | 40.57353 | 7 |
CGCAGAG | 15580 | 0.0 | 39.518826 | 8 |
GCAGAGT | 16680 | 0.0 | 37.055325 | 9 |
GTACATG | 16360 | 0.0 | 33.815434 | 1 |
ACATGGG | 16465 | 0.0 | 32.878407 | 3 |
TACATGG | 16740 | 0.0 | 32.731667 | 2 |
CATGGGG | 10280 | 0.0 | 32.000973 | 4 |
ATGGGGG | 5690 | 0.0 | 30.423687 | 5 |
AGAGTAC | 16020 | 0.0 | 30.33826 | 10-11 |
CATGGGT | 2985 | 0.0 | 29.495007 | 4 |
AGTACTT | 7390 | 0.0 | 27.369421 | 12-13 |
CAGAGTA | 16335 | 0.0 | 26.639515 | 10-11 |
TGGGGGG | 4765 | 0.0 | 26.466959 | 6 |