FastQCFastQC Report
Fri 10 Feb 2017
ERR1148102.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148102.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2646970
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT137880.5208974790042955No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74170.28020718028538294No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT69620.2630177145944231No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA94850.065.483151
GGTATCA42900.058.3008081
AACGCAG129850.047.3706936
TCAACGC130100.047.3253864
ATCAACG130250.047.2252123
CAACGCA133050.046.3207975
TATCAAC136250.045.629292
ACGCAGA151750.040.573537
CGCAGAG155800.039.5188268
GCAGAGT166800.037.0553259
GTACATG163600.033.8154341
ACATGGG164650.032.8784073
TACATGG167400.032.7316672
CATGGGG102800.032.0009734
ATGGGGG56900.030.4236875
AGAGTAC160200.030.3382610-11
CATGGGT29850.029.4950074
AGTACTT73900.027.36942112-13
CAGAGTA163350.026.63951510-11
TGGGGGG47650.026.4669596