Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148096.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2039319 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14713 | 0.72146633263359 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7756 | 0.3803230392106385 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7519 | 0.3687015126127889 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2075 | 0.10174965270269144 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 2045 | 0.10027857338650796 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 10435 | 0.0 | 61.23183 | 1 |
GGTATCA | 5045 | 0.0 | 58.07296 | 1 |
AACGCAG | 13805 | 0.0 | 46.064236 | 6 |
ATCAACG | 14205 | 0.0 | 44.767105 | 3 |
TCAACGC | 14285 | 0.0 | 44.474754 | 4 |
TATCAAC | 14610 | 0.0 | 43.818665 | 2 |
CAACGCA | 14595 | 0.0 | 43.61162 | 5 |
ACGCAGA | 15985 | 0.0 | 39.782093 | 7 |
CGCAGAG | 16185 | 0.0 | 39.290497 | 8 |
CATGGGT | 4550 | 0.0 | 37.914833 | 4 |
GCAGAGT | 17220 | 0.0 | 36.894417 | 9 |
GTACATG | 16315 | 0.0 | 36.280167 | 1 |
TACATGG | 16560 | 0.0 | 35.569023 | 2 |
ACATGGG | 16340 | 0.0 | 35.168 | 3 |
CATGGGG | 8780 | 0.0 | 32.65691 | 4 |
ATGGGGG | 4295 | 0.0 | 31.578701 | 5 |
AGAGTAC | 16735 | 0.0 | 30.214523 | 10-11 |
AGTACTT | 8085 | 0.0 | 28.621483 | 12-13 |
ATGGGTA | 1625 | 0.0 | 27.455568 | 5 |
CAGAGTA | 17080 | 0.0 | 27.14881 | 10-11 |