FastQCFastQC Report
Fri 10 Feb 2017
ERR1148061.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1148061.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3306786
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT229730.6947229122174825No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT135520.4098239196609638No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT109360.33071387141472114No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36620.11074197120708748No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA175450.053.3038941
GGTATCA100700.045.93331
AACGCAG228700.040.7800836
ATCAACG232350.040.088273
TCAACGC232000.040.0461964
CAACGCA234350.039.695395
TATCAAC235700.039.6717072
ACGCAGA266200.035.035337
CGCAGAG270250.034.5543068
GCAGAGT293350.031.9144139
GTACATG245950.028.5608621
ACATGGG240550.028.4849433
TACATGG245650.028.427542
GAGTACT124800.028.00022312-13
CATGGGG135850.027.9775334
AGAGTAC276250.026.48323410-11
AGTACTT131350.026.26431812-13
CAGAGTA281400.024.79374510-11
GTACTTT141500.024.71662114-15
CATGGGT39450.024.4250934