Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148061.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3306786 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22973 | 0.6947229122174825 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13552 | 0.4098239196609638 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10936 | 0.33071387141472114 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3662 | 0.11074197120708748 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 17545 | 0.0 | 53.303894 | 1 |
GGTATCA | 10070 | 0.0 | 45.9333 | 1 |
AACGCAG | 22870 | 0.0 | 40.780083 | 6 |
ATCAACG | 23235 | 0.0 | 40.08827 | 3 |
TCAACGC | 23200 | 0.0 | 40.046196 | 4 |
CAACGCA | 23435 | 0.0 | 39.69539 | 5 |
TATCAAC | 23570 | 0.0 | 39.671707 | 2 |
ACGCAGA | 26620 | 0.0 | 35.03533 | 7 |
CGCAGAG | 27025 | 0.0 | 34.554306 | 8 |
GCAGAGT | 29335 | 0.0 | 31.914413 | 9 |
GTACATG | 24595 | 0.0 | 28.560862 | 1 |
ACATGGG | 24055 | 0.0 | 28.484943 | 3 |
TACATGG | 24565 | 0.0 | 28.42754 | 2 |
GAGTACT | 12480 | 0.0 | 28.000223 | 12-13 |
CATGGGG | 13585 | 0.0 | 27.977533 | 4 |
AGAGTAC | 27625 | 0.0 | 26.483234 | 10-11 |
AGTACTT | 13135 | 0.0 | 26.264318 | 12-13 |
CAGAGTA | 28140 | 0.0 | 24.793745 | 10-11 |
GTACTTT | 14150 | 0.0 | 24.716621 | 14-15 |
CATGGGT | 3945 | 0.0 | 24.425093 | 4 |