Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148053.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3712407 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26799 | 0.7218766692337344 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14431 | 0.38872354243486773 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13675 | 0.36835939593907674 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 6027 | 0.16234750123033387 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4385 | 0.11811743701593064 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3827 | 0.10308675745951347 | No Hit |
GTATCAACGCAGAGTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAG | 3823 | 0.10297901065265742 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 16165 | 0.0 | 63.15515 | 1 |
GGTATCA | 7545 | 0.0 | 61.066364 | 1 |
TATCAAC | 21960 | 0.0 | 46.292248 | 2 |
AACGCAG | 22000 | 0.0 | 46.09869 | 6 |
TCAACGC | 22220 | 0.0 | 45.77611 | 4 |
ATCAACG | 22290 | 0.0 | 45.578983 | 3 |
CAACGCA | 22605 | 0.0 | 44.94384 | 5 |
ACGCAGA | 25455 | 0.0 | 39.911827 | 7 |
CGCAGAG | 26105 | 0.0 | 38.895256 | 8 |
GCAGAGT | 28135 | 0.0 | 36.236874 | 9 |
GTACATG | 25575 | 0.0 | 34.40164 | 1 |
ACATGGG | 25835 | 0.0 | 33.614853 | 3 |
TACATGG | 26385 | 0.0 | 33.20811 | 2 |
ATGGGGG | 11285 | 0.0 | 33.154 | 5 |
CATGGGG | 17270 | 0.0 | 32.89258 | 4 |
TGGGGGG | 8875 | 0.0 | 31.16531 | 6 |
AGAGTAC | 27205 | 0.0 | 29.670029 | 10-11 |
AGTACTT | 13730 | 0.0 | 27.358334 | 12-13 |
GAGTACT | 12655 | 0.0 | 27.238184 | 12-13 |
CAGAGTA | 28045 | 0.0 | 26.427095 | 10-11 |