Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148034.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2702880 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33995 | 1.2577324927484757 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19418 | 0.718418871722015 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17229 | 0.6374311845142959 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4914 | 0.181806073521577 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 25955 | 0.0 | 47.6382 | 1 |
AACGCAG | 31225 | 0.0 | 39.244167 | 6 |
GGTATCA | 15665 | 0.0 | 38.572296 | 1 |
TATCAAC | 33230 | 0.0 | 37.091793 | 2 |
ATCAACG | 33550 | 0.0 | 36.630943 | 3 |
TCAACGC | 33730 | 0.0 | 36.435467 | 4 |
CAACGCA | 34175 | 0.0 | 35.92622 | 5 |
CATGGGT | 4120 | 0.0 | 34.940453 | 4 |
ACGCAGA | 35480 | 0.0 | 34.63834 | 7 |
CGCAGAG | 35680 | 0.0 | 34.427505 | 8 |
GCAGAGT | 37690 | 0.0 | 32.67041 | 9 |
CATGGGG | 14805 | 0.0 | 30.817493 | 4 |
ATGGGTG | 2875 | 0.0 | 30.622046 | 5 |
ACATGGG | 29540 | 0.0 | 30.145443 | 3 |
GTACATG | 30620 | 0.0 | 29.940248 | 1 |
TACATGG | 30730 | 0.0 | 29.752928 | 2 |
GAGTACT | 17325 | 0.0 | 28.789902 | 12-13 |
AGTACTT | 18035 | 0.0 | 28.761444 | 12-13 |
AGAGTAC | 36425 | 0.0 | 27.346134 | 10-11 |
ATGGGGG | 5990 | 0.0 | 26.415886 | 5 |