Basic Statistics
Measure | Value |
---|---|
Filename | ERR1148004.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2902718 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17168 | 0.5914456726419859 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10067 | 0.34681288364904894 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7829 | 0.26971273130906964 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4805 | 0.0 | 68.033615 | 1 |
GTATCAA | 10800 | 0.0 | 65.554535 | 1 |
TCAACGC | 14935 | 0.0 | 47.312595 | 4 |
ATCAACG | 15090 | 0.0 | 46.90545 | 3 |
AACGCAG | 15120 | 0.0 | 46.694366 | 6 |
CAACGCA | 15305 | 0.0 | 46.246532 | 5 |
TATCAAC | 15915 | 0.0 | 44.815727 | 2 |
ACGCAGA | 17870 | 0.0 | 39.67503 | 7 |
CGCAGAG | 18235 | 0.0 | 38.88088 | 8 |
GCAGAGT | 19885 | 0.0 | 35.714478 | 9 |
GTACATG | 18965 | 0.0 | 33.281097 | 1 |
TACATGG | 19440 | 0.0 | 32.22182 | 2 |
ACATGGG | 19100 | 0.0 | 32.199768 | 3 |
CATGGGG | 11365 | 0.0 | 31.715292 | 4 |
AGAGTAC | 19045 | 0.0 | 29.185284 | 10-11 |
ATGGGGG | 6750 | 0.0 | 29.166866 | 5 |
GAGTACT | 8400 | 0.0 | 27.26133 | 12-13 |
CAGAGTA | 19505 | 0.0 | 26.697819 | 10-11 |
AGTACTT | 8890 | 0.0 | 26.327435 | 12-13 |
CATGGGT | 4600 | 0.0 | 26.248459 | 4 |