Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147998.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2616090 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15356 | 0.5869828637393973 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8626 | 0.3297287172841913 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7020 | 0.26833939199339474 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 11160 | 0.0 | 57.887424 | 1 |
GGTATCA | 5700 | 0.0 | 53.58721 | 1 |
AACGCAG | 14395 | 0.0 | 44.78727 | 6 |
TCAACGC | 14755 | 0.0 | 43.61391 | 4 |
ATCAACG | 14840 | 0.0 | 43.32402 | 3 |
CAACGCA | 15045 | 0.0 | 42.931355 | 5 |
TATCAAC | 15660 | 0.0 | 41.291225 | 2 |
ACGCAGA | 16805 | 0.0 | 38.43512 | 7 |
CGCAGAG | 17260 | 0.0 | 37.45637 | 8 |
GCAGAGT | 18535 | 0.0 | 34.97606 | 9 |
GTACATG | 16350 | 0.0 | 33.940388 | 1 |
TACATGG | 16815 | 0.0 | 32.90077 | 2 |
ACATGGG | 16690 | 0.0 | 32.46377 | 3 |
CATGGGG | 9290 | 0.0 | 30.217827 | 4 |
ATGGGGG | 4725 | 0.0 | 29.58033 | 5 |
AGAGTAC | 17875 | 0.0 | 28.481619 | 10-11 |
CATGGGT | 3245 | 0.0 | 26.759323 | 4 |
GAGTACT | 9160 | 0.0 | 26.393808 | 12-13 |
CAGAGTA | 18305 | 0.0 | 25.976803 | 10-11 |
AGTACTT | 9550 | 0.0 | 25.72075 | 12-13 |