FastQCFastQC Report
Fri 10 Feb 2017
ERR1147998.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147998.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2616090
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT153560.5869828637393973No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT86260.3297287172841913No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70200.26833939199339474No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA111600.057.8874241
GGTATCA57000.053.587211
AACGCAG143950.044.787276
TCAACGC147550.043.613914
ATCAACG148400.043.324023
CAACGCA150450.042.9313555
TATCAAC156600.041.2912252
ACGCAGA168050.038.435127
CGCAGAG172600.037.456378
GCAGAGT185350.034.976069
GTACATG163500.033.9403881
TACATGG168150.032.900772
ACATGGG166900.032.463773
CATGGGG92900.030.2178274
ATGGGGG47250.029.580335
AGAGTAC178750.028.48161910-11
CATGGGT32450.026.7593234
GAGTACT91600.026.39380812-13
CAGAGTA183050.025.97680310-11
AGTACTT95500.025.7207512-13