Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147968.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1306739 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8038 | 0.6151190099935794 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5471 | 0.41867580289560496 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3778 | 0.2891166483896172 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4225 | 0.0 | 50.728283 | 1 |
GTATCAA | 6725 | 0.0 | 44.4412 | 1 |
AACGCAG | 8205 | 0.0 | 36.89617 | 6 |
TATAGCG | 65 | 0.001942833 | 36.600643 | 5 |
TCAACGC | 8645 | 0.0 | 34.81189 | 4 |
CAACGCA | 8755 | 0.0 | 34.44244 | 5 |
ATCAACG | 8755 | 0.0 | 34.306572 | 3 |
TATCAAC | 9160 | 0.0 | 32.988316 | 2 |
ACGCAGA | 9430 | 0.0 | 32.229332 | 7 |
CGCAGAG | 9720 | 0.0 | 31.328945 | 8 |
CGGTATA | 95 | 3.292112E-4 | 31.306778 | 2 |
ACCGTAT | 80 | 0.005373035 | 29.738022 | 8 |
GTACATG | 8770 | 0.0 | 29.597925 | 1 |
GCAGAGT | 10550 | 0.0 | 28.92058 | 9 |
TACATGG | 8970 | 0.0 | 28.846209 | 2 |
ACATGGG | 8920 | 0.0 | 28.271124 | 3 |
TATCACG | 85 | 0.0072208634 | 27.991943 | 2 |
CATGGGG | 4445 | 0.0 | 27.697508 | 4 |
GAGTACT | 4945 | 0.0 | 26.88149 | 12-13 |
ATGGGGG | 1960 | 0.0 | 25.793184 | 5 |