Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147926.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1824143 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11385 | 0.6241287004363145 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6242 | 0.342188085035 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5488 | 0.30085360632362707 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2428 | 0.13310359988224607 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 1882 | 0.10317173598780359 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 8340 | 0.0 | 55.97831 | 1 |
GGTATCA | 4395 | 0.0 | 46.60895 | 1 |
AACGCAG | 10385 | 0.0 | 44.902153 | 6 |
TCAACGC | 11030 | 0.0 | 42.222492 | 4 |
ATCAACG | 11170 | 0.0 | 41.586792 | 3 |
CAACGCA | 11225 | 0.0 | 41.54199 | 5 |
TATCAAC | 11765 | 0.0 | 39.691254 | 2 |
ACGCAGA | 12315 | 0.0 | 37.913403 | 7 |
CGCAGAG | 12535 | 0.0 | 37.390343 | 8 |
GCAGAGT | 13580 | 0.0 | 34.556904 | 9 |
GTACATG | 12420 | 0.0 | 32.890636 | 1 |
TACATGG | 12550 | 0.0 | 32.27903 | 2 |
TAACGCA | 150 | 1.483877E-7 | 31.721687 | 4 |
ACATGGG | 12535 | 0.0 | 31.648932 | 3 |
CATGGGG | 7595 | 0.0 | 31.011656 | 4 |
ATGGGGG | 4555 | 0.0 | 28.857683 | 5 |
AGAGTAC | 13190 | 0.0 | 28.048082 | 10-11 |
AGTACTT | 6750 | 0.0 | 26.65503 | 12-13 |
CATGGGT | 2225 | 0.0 | 26.464441 | 4 |
TGGGGGG | 3860 | 0.0 | 26.349136 | 6 |