Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147870.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1945825 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5889 | 0.30264797707913094 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3730 | 0.19169246977503115 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2913 | 0.1497051379235029 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2140 | 0.0 | 67.64065 | 1 |
GTATCAA | 4200 | 0.0 | 57.866356 | 1 |
TCAACGC | 5655 | 0.0 | 42.48961 | 4 |
ATCAACG | 5860 | 0.0 | 41.105747 | 3 |
CAACGCA | 5885 | 0.0 | 40.82901 | 5 |
AACGCAG | 6275 | 0.0 | 38.38621 | 6 |
TATCAAC | 6665 | 0.0 | 36.24326 | 2 |
GTACATG | 8090 | 0.0 | 33.13441 | 1 |
ACGCAGA | 7495 | 0.0 | 32.058537 | 7 |
TACATGG | 8520 | 0.0 | 31.494762 | 2 |
CGCAGAG | 7865 | 0.0 | 30.474758 | 8 |
ACATGGG | 8630 | 0.0 | 30.117281 | 3 |
GCAGAGT | 8575 | 0.0 | 28.367636 | 9 |
CATGGGG | 5260 | 0.0 | 27.815273 | 4 |
AGAGTAC | 7910 | 0.0 | 25.752422 | 10-11 |
ATGGGGG | 3135 | 0.0 | 25.611214 | 5 |
TATCACG | 165 | 1.1106547E-5 | 25.24152 | 2 |
GTATCGC | 215 | 1.2379678E-7 | 24.896484 | 6 |
CAGAGTA | 8285 | 0.0 | 23.366434 | 10-11 |
GAGTACT | 3590 | 0.0 | 22.779396 | 12-13 |