Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147854.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3971626 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12017 | 0.30257128944165435 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6669 | 0.16791611294719092 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5870 | 0.14779840800719907 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4315 | 0.0 | 60.58154 | 1 |
GTATCAA | 8995 | 0.0 | 60.17544 | 1 |
TCAACGC | 11595 | 0.0 | 46.423363 | 4 |
CAACGCA | 11840 | 0.0 | 45.46274 | 5 |
ATCAACG | 11955 | 0.0 | 44.97567 | 3 |
AACGCAG | 12280 | 0.0 | 43.88222 | 6 |
TATCAAC | 13900 | 0.0 | 38.862766 | 2 |
ACGCAGA | 14545 | 0.0 | 37.007828 | 7 |
CGCAGAG | 15175 | 0.0 | 35.393036 | 8 |
GTACATG | 15850 | 0.0 | 33.36109 | 1 |
GCAGAGT | 16725 | 0.0 | 32.184086 | 9 |
TACATGG | 16385 | 0.0 | 31.988369 | 2 |
ACATGGG | 16355 | 0.0 | 31.239304 | 3 |
CATGGGG | 9495 | 0.0 | 26.998589 | 4 |
AGAGTAC | 15685 | 0.0 | 26.866684 | 10-11 |
CAGAGTA | 16420 | 0.0 | 24.341923 | 10-11 |
GAGTACT | 7285 | 0.0 | 23.921963 | 12-13 |
AGTACTT | 7815 | 0.0 | 22.794317 | 12-13 |
CATGGGT | 4065 | 0.0 | 22.240358 | 4 |
ATGGGGG | 4645 | 0.0 | 21.896221 | 5 |