Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147852.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1875341 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6412 | 0.3419111510919881 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3970 | 0.21169483309968692 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2911 | 0.15522510306125661 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2365 | 0.0 | 68.72747 | 1 |
GTATCAA | 4730 | 0.0 | 62.307873 | 1 |
TCAACGC | 6420 | 0.0 | 45.396217 | 4 |
CAACGCA | 6595 | 0.0 | 44.19162 | 5 |
ATCAACG | 6605 | 0.0 | 44.12471 | 3 |
AACGCAG | 6810 | 0.0 | 42.70909 | 6 |
TATCAAC | 7225 | 0.0 | 40.675117 | 2 |
ACGCAGA | 7910 | 0.0 | 36.84497 | 7 |
CGCAGAG | 8260 | 0.0 | 35.21174 | 8 |
GCAGAGT | 9010 | 0.0 | 32.67676 | 9 |
GTACATG | 7945 | 0.0 | 30.200214 | 1 |
TACATGG | 8320 | 0.0 | 28.672182 | 2 |
ACATGGG | 8380 | 0.0 | 27.751814 | 3 |
GAGTACT | 3860 | 0.0 | 27.042599 | 12-13 |
AGAGTAC | 8485 | 0.0 | 26.602262 | 10-11 |
CAGAGTA | 8830 | 0.0 | 25.697594 | 10-11 |
GTACTTT | 4390 | 0.0 | 23.913261 | 14-15 |
CATGGGG | 4850 | 0.0 | 23.05551 | 4 |
CATGGGT | 2245 | 0.0 | 23.049501 | 4 |
AGTACTT | 4195 | 0.0 | 23.039871 | 12-13 |