Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147821.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3088034 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20204 | 0.6542674076775061 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11181 | 0.36207502896665 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9360 | 0.3031054709889852 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3132 | 0.1014237537540066 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 13390 | 0.0 | 57.12058 | 1 |
GGTATCA | 6930 | 0.0 | 51.70509 | 1 |
AACGCAG | 17285 | 0.0 | 43.806 | 6 |
ATCAACG | 17850 | 0.0 | 42.552715 | 3 |
TCAACGC | 17890 | 0.0 | 42.39107 | 4 |
CAACGCA | 18105 | 0.0 | 41.85482 | 5 |
TATCAAC | 19055 | 0.0 | 40.205135 | 2 |
ACGCAGA | 20245 | 0.0 | 37.43055 | 7 |
CGCAGAG | 20650 | 0.0 | 36.66645 | 8 |
GCAGAGT | 22315 | 0.0 | 33.983948 | 9 |
GTACATG | 18605 | 0.0 | 30.104403 | 1 |
TACATGG | 19060 | 0.0 | 29.084902 | 2 |
ACATGGG | 19135 | 0.0 | 28.442461 | 3 |
AGAGTAC | 21220 | 0.0 | 28.30932 | 10-11 |
GAGTACT | 10615 | 0.0 | 27.203373 | 12-13 |
CATGGGT | 4525 | 0.0 | 25.76393 | 4 |
AGTACTT | 11300 | 0.0 | 25.738539 | 12-13 |
CATGGGG | 9990 | 0.0 | 25.721296 | 4 |
CAGAGTA | 21910 | 0.0 | 25.544697 | 10-11 |
GTACTTT | 12330 | 0.0 | 23.41961 | 14-15 |