Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147807.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1883215 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8134 | 0.4319209437053125 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4253 | 0.22583719862044432 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3566 | 0.18935703039748517 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 5565 | 0.0 | 57.665314 | 1 |
GGTATCA | 2930 | 0.0 | 54.660767 | 1 |
TCAACGC | 7285 | 0.0 | 43.52307 | 4 |
CAACGCA | 7465 | 0.0 | 42.393932 | 5 |
AACGCAG | 7565 | 0.0 | 42.305347 | 6 |
ATCAACG | 7505 | 0.0 | 42.08872 | 3 |
TATCAAC | 8210 | 0.0 | 39.05418 | 2 |
ACGCAGA | 8685 | 0.0 | 36.84973 | 7 |
CGCAGAG | 9000 | 0.0 | 35.625145 | 8 |
GTACATG | 8870 | 0.0 | 32.151627 | 1 |
GCAGAGT | 10070 | 0.0 | 31.839752 | 9 |
TACATGG | 9115 | 0.0 | 31.195583 | 2 |
ACATGGG | 9130 | 0.0 | 30.753399 | 3 |
AGAGTAC | 9455 | 0.0 | 26.486887 | 10-11 |
CATGGGG | 4690 | 0.0 | 24.606554 | 4 |
CAGAGTA | 9845 | 0.0 | 24.350039 | 10-11 |
GAGTACT | 4955 | 0.0 | 23.289942 | 12-13 |
CATGGGA | 3890 | 0.0 | 22.938423 | 4 |
AGTACTT | 5425 | 0.0 | 21.82045 | 12-13 |
CATGGGT | 2065 | 0.0 | 21.029295 | 4 |