Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147803.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6891733 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14767 | 0.2142712145116475 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9635 | 0.13980518397912398 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 16655 | 0.0 | 49.071636 | 1 |
GGTATCA | 8475 | 0.0 | 44.10873 | 1 |
TCAACGC | 18925 | 0.0 | 42.274235 | 4 |
AACGCAG | 19130 | 0.0 | 41.883404 | 6 |
CAACGCA | 19350 | 0.0 | 41.468697 | 5 |
ATCAACG | 20235 | 0.0 | 39.596226 | 3 |
ACGCAGA | 21470 | 0.0 | 37.373707 | 7 |
CGCAGAG | 22010 | 0.0 | 36.452797 | 8 |
TATCAAC | 22680 | 0.0 | 35.564655 | 2 |
GCAGAGT | 25290 | 0.0 | 31.84262 | 9 |
GTACATG | 24020 | 0.0 | 29.911549 | 1 |
ACATGGG | 23355 | 0.0 | 29.594816 | 3 |
TACATGG | 25590 | 0.0 | 27.708178 | 2 |
AGAGTAC | 24485 | 0.0 | 26.634296 | 10-11 |
CATGGGG | 11120 | 0.0 | 25.836384 | 4 |
GAGTACT | 11320 | 0.0 | 24.010569 | 12-13 |
CAGAGTA | 26235 | 0.0 | 22.533983 | 10-11 |
CATGGGA | 12240 | 0.0 | 21.18822 | 4 |
ATGGGGG | 5315 | 0.0 | 20.480341 | 5 |
AGTACAT | 19685 | 0.0 | 19.321365 | 12-13 |