Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147755.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2033189 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8149 | 0.40079894195768323 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4949 | 0.24341072079378748 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3623 | 0.1781929766489982 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT | 2072 | 0.10190887320362249 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2590 | 0.0 | 65.50831 | 1 |
GTATCAA | 5635 | 0.0 | 64.65599 | 1 |
TCAACGC | 7640 | 0.0 | 47.95722 | 4 |
ATCAACG | 7855 | 0.0 | 46.56885 | 3 |
CAACGCA | 7940 | 0.0 | 46.22014 | 5 |
AACGCAG | 8250 | 0.0 | 44.55548 | 6 |
TATCAAC | 8750 | 0.0 | 42.078465 | 2 |
ACGCAGA | 9555 | 0.0 | 38.531498 | 7 |
CGCAGAG | 9895 | 0.0 | 37.26763 | 8 |
GCAGAGT | 10740 | 0.0 | 34.3355 | 9 |
GTACATG | 9480 | 0.0 | 30.331234 | 1 |
TACATGG | 9855 | 0.0 | 28.970894 | 2 |
ACATGGG | 9775 | 0.0 | 28.720488 | 3 |
AGAGTAC | 10005 | 0.0 | 28.059557 | 10-11 |
GAGTACT | 4770 | 0.0 | 26.621677 | 12-13 |
CAGAGTA | 10430 | 0.0 | 25.861214 | 10-11 |
CATGGGT | 2455 | 0.0 | 25.681536 | 4 |
AGTACTT | 5255 | 0.0 | 24.164682 | 12-13 |
GTATACG | 150 | 1.6810556E-4 | 23.812843 | 1 |
TAGGTCG | 125 | 0.001637254 | 23.791761 | 6 |