FastQCFastQC Report
Fri 10 Feb 2017
ERR1147755.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147755.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2033189
Sequences flagged as poor quality0
Sequence length125
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT81490.40079894195768323No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49490.24341072079378748No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36230.1781929766489982No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT20720.10190887320362249No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA25900.065.508311
GTATCAA56350.064.655991
TCAACGC76400.047.957224
ATCAACG78550.046.568853
CAACGCA79400.046.220145
AACGCAG82500.044.555486
TATCAAC87500.042.0784652
ACGCAGA95550.038.5314987
CGCAGAG98950.037.267638
GCAGAGT107400.034.33559
GTACATG94800.030.3312341
TACATGG98550.028.9708942
ACATGGG97750.028.7204883
AGAGTAC100050.028.05955710-11
GAGTACT47700.026.62167712-13
CAGAGTA104300.025.86121410-11
CATGGGT24550.025.6815364
AGTACTT52550.024.16468212-13
GTATACG1501.6810556E-423.8128431
TAGGTCG1250.00163725423.7917616