Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147750.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2882390 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10935 | 0.37937267337175057 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6351 | 0.22033798340960106 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5521 | 0.1915424352707302 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 8595 | 0.0 | 56.589516 | 1 |
GGTATCA | 4565 | 0.0 | 51.512913 | 1 |
TCAACGC | 11120 | 0.0 | 43.329704 | 4 |
ATCAACG | 11265 | 0.0 | 42.930393 | 3 |
AACGCAG | 11275 | 0.0 | 42.681286 | 6 |
CAACGCA | 11420 | 0.0 | 42.035187 | 5 |
TATCAAC | 12800 | 0.0 | 38.20035 | 2 |
ACGCAGA | 13240 | 0.0 | 36.346786 | 7 |
CGCAGAG | 13760 | 0.0 | 35.01402 | 8 |
GTACATG | 14350 | 0.0 | 33.85307 | 1 |
TACATGG | 14795 | 0.0 | 32.767864 | 2 |
ACATGGG | 14455 | 0.0 | 32.55097 | 3 |
GCAGAGT | 14930 | 0.0 | 32.3498 | 9 |
CATGGGG | 7530 | 0.0 | 27.964933 | 4 |
AGAGTAC | 14090 | 0.0 | 27.058727 | 10-11 |
CATGGGT | 3685 | 0.0 | 25.666412 | 4 |
CAGAGTA | 14545 | 0.0 | 24.760574 | 10-11 |
GAGTACT | 6595 | 0.0 | 24.215296 | 12-13 |
AGTACTT | 6975 | 0.0 | 23.492958 | 12-13 |
ATGGGGG | 3670 | 0.0 | 23.340057 | 5 |