Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147537.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3750489 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26433 | 0.7047880956323295 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14635 | 0.39021578252862493 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12598 | 0.3359028649330794 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4433 | 0.11819792032452302 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3845 | 0.10251996472993255 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 18675 | 0.0 | 57.343895 | 1 |
GGTATCA | 9510 | 0.0 | 51.890835 | 1 |
AACGCAG | 23365 | 0.0 | 45.547634 | 6 |
TCAACGC | 24475 | 0.0 | 43.62777 | 4 |
ATCAACG | 24730 | 0.0 | 43.155003 | 3 |
CAACGCA | 24975 | 0.0 | 42.659065 | 5 |
TATCAAC | 25975 | 0.0 | 41.36248 | 2 |
ACGCAGA | 27365 | 0.0 | 38.845325 | 7 |
CGCAGAG | 28050 | 0.0 | 37.93911 | 8 |
GCAGAGT | 30000 | 0.0 | 35.55238 | 9 |
GTACATG | 26700 | 0.0 | 33.57611 | 1 |
TACATGG | 27455 | 0.0 | 32.35063 | 2 |
ACATGGG | 27510 | 0.0 | 31.766111 | 3 |
CATGGGT | 8110 | 0.0 | 30.660318 | 4 |
CATGGGG | 13625 | 0.0 | 28.990307 | 4 |
AGAGTAC | 29345 | 0.0 | 27.953732 | 10-11 |
ATGGGGG | 6035 | 0.0 | 27.40241 | 5 |
GAGTACT | 14240 | 0.0 | 26.672308 | 12-13 |
CAGAGTA | 29805 | 0.0 | 26.254963 | 10-11 |
AGTACTT | 14940 | 0.0 | 26.019842 | 12-13 |