Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147533.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1976055 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10445 | 0.5285784049533034 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6672 | 0.33764242392038685 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5317 | 0.2690714580312795 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2039 | 0.10318538704641318 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 10240 | 0.0 | 45.451237 | 1 |
GGTATCA | 6140 | 0.0 | 43.522804 | 1 |
AACGCAG | 12320 | 0.0 | 37.46693 | 6 |
TCAACGC | 13060 | 0.0 | 35.343994 | 4 |
ATCAACG | 13240 | 0.0 | 34.81944 | 3 |
CAACGCA | 13355 | 0.0 | 34.65236 | 5 |
TATCAAC | 13740 | 0.0 | 33.682236 | 2 |
ACGCAGA | 14335 | 0.0 | 32.158894 | 7 |
CGCAGAG | 14575 | 0.0 | 31.587734 | 8 |
ATGGGGG | 3850 | 0.0 | 31.055063 | 5 |
CATGGGG | 7910 | 0.0 | 30.456194 | 4 |
GTACATG | 14405 | 0.0 | 30.409092 | 1 |
TATCACG | 120 | 3.7036792E-5 | 29.74254 | 2 |
TACATGG | 14735 | 0.0 | 29.631525 | 2 |
ACATGGG | 14555 | 0.0 | 29.466673 | 3 |
GCAGAGT | 15860 | 0.0 | 29.215973 | 9 |
TATAACG | 170 | 4.437079E-7 | 27.99298 | 2 |
TGGGGGG | 3270 | 0.0 | 27.649857 | 6 |
AGAGTAC | 15465 | 0.0 | 24.750544 | 10-11 |
AGTACTT | 7390 | 0.0 | 23.744535 | 12-13 |