Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147492.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2707275 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24312 | 0.8980247666011026 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14661 | 0.5415408482699393 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13049 | 0.4819975805930317 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3720 | 0.13740754079286369 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3519 | 0.12998310108873315 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8480 | 0.0 | 53.912415 | 1 |
GTATCAA | 15580 | 0.0 | 53.262157 | 1 |
AACGCAG | 19730 | 0.0 | 41.62754 | 6 |
ATCAACG | 20985 | 0.0 | 39.25791 | 3 |
TCAACGC | 21085 | 0.0 | 39.008816 | 4 |
TATCAAC | 21255 | 0.0 | 38.98382 | 2 |
CAACGCA | 21525 | 0.0 | 38.156162 | 5 |
ACGCAGA | 22805 | 0.0 | 36.06669 | 7 |
CGCAGAG | 23100 | 0.0 | 35.65759 | 8 |
GCAGAGT | 25010 | 0.0 | 33.005775 | 9 |
GTACATG | 20025 | 0.0 | 31.77815 | 1 |
TACATGG | 20705 | 0.0 | 30.739933 | 2 |
ACATGGG | 20755 | 0.0 | 30.292747 | 3 |
CATGGGG | 11340 | 0.0 | 29.316555 | 4 |
AGAGTAC | 24120 | 0.0 | 28.379988 | 10-11 |
ATGGGGG | 5255 | 0.0 | 28.179989 | 5 |
CATGGGT | 4745 | 0.0 | 26.6967 | 4 |
AGTACTT | 13595 | 0.0 | 26.269268 | 12-13 |
CAGAGTA | 24695 | 0.0 | 25.912983 | 10-11 |
GAGTACT | 13065 | 0.0 | 25.309265 | 12-13 |