Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147473.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2826931 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18125 | 0.6411546656073318 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10861 | 0.38419756265717137 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9217 | 0.32604262360842906 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4044 | 0.14305266028778205 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 3984 | 0.14093021725680607 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3254 | 0.11510716037993146 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5805 | 0.0 | 68.2967 | 1 |
GTATCAA | 11955 | 0.0 | 60.2011 | 1 |
ATCAACG | 16525 | 0.0 | 43.018414 | 3 |
TCAACGC | 16560 | 0.0 | 42.921425 | 4 |
AACGCAG | 16820 | 0.0 | 42.22259 | 6 |
CAACGCA | 17010 | 0.0 | 41.716 | 5 |
TATCAAC | 17545 | 0.0 | 40.756275 | 2 |
ACGCAGA | 19600 | 0.0 | 36.355263 | 7 |
CGCAGAG | 19995 | 0.0 | 35.60732 | 8 |
GTACATG | 20635 | 0.0 | 35.599052 | 1 |
TACATGG | 21035 | 0.0 | 34.87096 | 2 |
ATGGGGG | 7915 | 0.0 | 34.567936 | 5 |
ACATGGG | 21130 | 0.0 | 34.43142 | 3 |
GCAGAGT | 21345 | 0.0 | 33.46674 | 9 |
CATGGGG | 12535 | 0.0 | 33.357807 | 4 |
TGGGGGG | 6915 | 0.0 | 31.739546 | 6 |
CATGGGT | 4910 | 0.0 | 30.284822 | 4 |
AGAGTAC | 20670 | 0.0 | 28.286524 | 10-11 |
TATCACG | 150 | 5.3049553E-6 | 27.761963 | 2 |
AGTACTT | 9565 | 0.0 | 26.801483 | 12-13 |