Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147465.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2857974 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20723 | 0.7250940701349977 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12225 | 0.42775056735995504 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10556 | 0.3693525553416511 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3584 | 0.12540352011599826 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3484 | 0.12190453796990457 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 2889 | 0.10108559420064704 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 14620 | 0.0 | 58.755985 | 1 |
GGTATCA | 7335 | 0.0 | 55.593452 | 1 |
AACGCAG | 18970 | 0.0 | 44.709286 | 6 |
ATCAACG | 19760 | 0.0 | 43.021145 | 3 |
TCAACGC | 19860 | 0.0 | 42.73564 | 4 |
CAACGCA | 20255 | 0.0 | 41.90224 | 5 |
TATCAAC | 20630 | 0.0 | 41.351055 | 2 |
ACGCAGA | 22280 | 0.0 | 38.067104 | 7 |
CGCAGAG | 22745 | 0.0 | 37.262707 | 8 |
GCAGAGT | 24145 | 0.0 | 35.200638 | 9 |
GTACATG | 22035 | 0.0 | 33.688877 | 1 |
TACATGG | 22565 | 0.0 | 32.61152 | 2 |
ATGGGGG | 6005 | 0.0 | 32.38771 | 5 |
ACATGGG | 22495 | 0.0 | 32.342766 | 3 |
CATGGGT | 4825 | 0.0 | 30.940115 | 4 |
CATGGGG | 12040 | 0.0 | 30.13345 | 4 |
AGAGTAC | 23600 | 0.0 | 28.893993 | 10-11 |
TATCACG | 150 | 5.3056137E-6 | 27.761536 | 2 |
TGGGGGG | 5520 | 0.0 | 27.15232 | 6 |
GAGTACT | 11620 | 0.0 | 26.564812 | 12-13 |