FastQCFastQC Report
Fri 10 Feb 2017
ERR1147465.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147465.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2857974
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT207230.7250940701349977No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT122250.42775056735995504No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT105560.3693525553416511No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT35840.12540352011599826No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34840.12190453796990457No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC28890.10108559420064704No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA146200.058.7559851
GGTATCA73350.055.5934521
AACGCAG189700.044.7092866
ATCAACG197600.043.0211453
TCAACGC198600.042.735644
CAACGCA202550.041.902245
TATCAAC206300.041.3510552
ACGCAGA222800.038.0671047
CGCAGAG227450.037.2627078
GCAGAGT241450.035.2006389
GTACATG220350.033.6888771
TACATGG225650.032.611522
ATGGGGG60050.032.387715
ACATGGG224950.032.3427663
CATGGGT48250.030.9401154
CATGGGG120400.030.133454
AGAGTAC236000.028.89399310-11
TATCACG1505.3056137E-627.7615362
TGGGGGG55200.027.152326
GAGTACT116200.026.56481212-13