Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147457.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1795196 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15616 | 0.8698771610453678 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9811 | 0.5465141410742893 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7966 | 0.44373984790518695 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2565 | 0.14288133440582532 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2488 | 0.13859210916245357 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT | 1975 | 0.11001584228128851 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA | 1945 | 0.10834471556309172 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 11200 | 0.0 | 53.355145 | 1 |
GGTATCA | 6150 | 0.0 | 52.55152 | 1 |
AACGCAG | 14225 | 0.0 | 41.725353 | 6 |
ATCAACG | 15015 | 0.0 | 39.536617 | 3 |
TCAACGC | 15110 | 0.0 | 39.360203 | 4 |
CAACGCA | 15475 | 0.0 | 38.470264 | 5 |
TATCAAC | 15640 | 0.0 | 37.994705 | 2 |
GCGTATC | 145 | 2.6611815E-9 | 36.943253 | 1 |
ACGCAGA | 16585 | 0.0 | 35.85967 | 7 |
CGCAGAG | 16860 | 0.0 | 35.310047 | 8 |
GTACATG | 15455 | 0.0 | 33.96723 | 1 |
GCAGAGT | 17850 | 0.0 | 33.484947 | 9 |
TACATGG | 15765 | 0.0 | 33.127975 | 2 |
CATGGGG | 7540 | 0.0 | 33.049465 | 4 |
ACATGGG | 15685 | 0.0 | 32.955627 | 3 |
ATGGGGG | 3215 | 0.0 | 30.707811 | 5 |
CATGGGT | 4195 | 0.0 | 30.480932 | 4 |
GTAAGTA | 990 | 0.0 | 28.840342 | 2 |
AGAGTAC | 17380 | 0.0 | 28.07699 | 10-11 |
CGTATCA | 200 | 6.136543E-8 | 26.76744 | 2 |