FastQCFastQC Report
Fri 10 Feb 2017
ERR1147457.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147457.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1795196
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT156160.8698771610453678No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT98110.5465141410742893No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79660.44373984790518695No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25650.14288133440582532No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24880.13859210916245357No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT19750.11001584228128851No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA19450.10834471556309172No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA112000.053.3551451
GGTATCA61500.052.551521
AACGCAG142250.041.7253536
ATCAACG150150.039.5366173
TCAACGC151100.039.3602034
CAACGCA154750.038.4702645
TATCAAC156400.037.9947052
GCGTATC1452.6611815E-936.9432531
ACGCAGA165850.035.859677
CGCAGAG168600.035.3100478
GTACATG154550.033.967231
GCAGAGT178500.033.4849479
TACATGG157650.033.1279752
CATGGGG75400.033.0494654
ACATGGG156850.032.9556273
ATGGGGG32150.030.7078115
CATGGGT41950.030.4809324
GTAAGTA9900.028.8403422
AGAGTAC173800.028.0769910-11
CGTATCA2006.136543E-826.767442