Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147454.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2488091 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19151 | 0.7697065742370356 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11304 | 0.45432421884890867 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9469 | 0.3805728970523988 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3587 | 0.14416675274336832 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3244 | 0.13038108332854387 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 13455 | 0.0 | 51.93683 | 1 |
GGTATCA | 7330 | 0.0 | 51.07845 | 1 |
AACGCAG | 16620 | 0.0 | 41.65468 | 6 |
TCAACGC | 17675 | 0.0 | 39.202007 | 4 |
ATCAACG | 17665 | 0.0 | 39.161583 | 3 |
CAACGCA | 17960 | 0.0 | 38.513695 | 5 |
TATCAAC | 18910 | 0.0 | 36.870804 | 2 |
ACGCAGA | 19405 | 0.0 | 35.676403 | 7 |
CGCAGAG | 19765 | 0.0 | 34.996506 | 8 |
GCAGAGT | 20985 | 0.0 | 33.07529 | 9 |
GTACATG | 17390 | 0.0 | 32.791172 | 1 |
TACATGG | 17695 | 0.0 | 32.03973 | 2 |
ATGGGGG | 3905 | 0.0 | 31.223 | 5 |
ACATGGG | 18010 | 0.0 | 31.112246 | 3 |
GTATACG | 135 | 2.3247085E-6 | 30.864218 | 1 |
CATGGGG | 9465 | 0.0 | 29.722294 | 4 |
AGAGTAC | 20370 | 0.0 | 27.796345 | 10-11 |
CATGGGT | 4420 | 0.0 | 26.373974 | 4 |
GAGTACT | 10980 | 0.0 | 25.810852 | 12-13 |
AGTACTT | 11385 | 0.0 | 25.780773 | 12-13 |