Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147451.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2926322 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29815 | 1.0188557513493048 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18327 | 0.6262810449431061 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14707 | 0.5025762715107907 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4743 | 0.1620805912678099 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4333 | 0.14806982963597307 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT | 3337 | 0.11403393064741338 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA | 3129 | 0.10692603206345712 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 20605 | 0.0 | 54.326046 | 1 |
GGTATCA | 11115 | 0.0 | 52.551174 | 1 |
AACGCAG | 25505 | 0.0 | 43.74695 | 6 |
ATCAACG | 27455 | 0.0 | 40.671898 | 3 |
TCAACGC | 27545 | 0.0 | 40.528614 | 4 |
CAACGCA | 28040 | 0.0 | 39.89799 | 5 |
TATCAAC | 28225 | 0.0 | 39.731636 | 2 |
ACGCAGA | 29740 | 0.0 | 37.497353 | 7 |
CGCAGAG | 30060 | 0.0 | 37.11796 | 8 |
GCAGAGT | 31910 | 0.0 | 35.115135 | 9 |
CATGGGT | 8485 | 0.0 | 33.29523 | 4 |
GTACATG | 27125 | 0.0 | 32.02642 | 1 |
ATGGGTG | 4440 | 0.0 | 31.747215 | 5 |
TACATGG | 27310 | 0.0 | 31.739265 | 2 |
ACATGGG | 27255 | 0.0 | 31.235254 | 3 |
AGAGTAC | 31490 | 0.0 | 28.708546 | 10-11 |
CATGGGG | 12670 | 0.0 | 28.07145 | 4 |
AGTACTT | 16265 | 0.0 | 27.79072 | 12-13 |
GAGTACT | 15730 | 0.0 | 27.696136 | 12-13 |
CAGAGTA | 31855 | 0.0 | 26.764576 | 10-11 |