FastQCFastQC Report
Fri 10 Feb 2017
ERR1147446.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147446.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3154628
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT218290.6919674839632438No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT136000.43111263832058805No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT108060.34254435071266726No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37370.11846087716206159No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT35860.11367425889835506No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA86450.052.8718761
GTATCAA156800.052.379521
AACGCAG192450.042.43056
TCAACGC203700.040.1163334
ATCAACG204850.039.838743
CAACGCA207450.039.362495
TATCAAC214100.038.257672
ACGCAGA223700.036.5031287
CGCAGAG229350.035.6557438
GCAGAGT246750.033.2860349
GTACATG204150.029.5900141
TACATGG209950.028.5025272
ACATGGG210850.028.0414353
AGAGTAC238700.027.53184710-11
CATGGGG113300.026.5611044
GAGTACT123850.026.14733112-13
CAGAGTA245600.026.1045310-11
AGTACTT128950.025.59747712-13
CATGGGT43600.024.9626164
ATGGGGG53850.023.634895