Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147446.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3154628 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21829 | 0.6919674839632438 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13600 | 0.43111263832058805 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10806 | 0.34254435071266726 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3737 | 0.11846087716206159 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3586 | 0.11367425889835506 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8645 | 0.0 | 52.871876 | 1 |
GTATCAA | 15680 | 0.0 | 52.37952 | 1 |
AACGCAG | 19245 | 0.0 | 42.4305 | 6 |
TCAACGC | 20370 | 0.0 | 40.116333 | 4 |
ATCAACG | 20485 | 0.0 | 39.83874 | 3 |
CAACGCA | 20745 | 0.0 | 39.36249 | 5 |
TATCAAC | 21410 | 0.0 | 38.25767 | 2 |
ACGCAGA | 22370 | 0.0 | 36.503128 | 7 |
CGCAGAG | 22935 | 0.0 | 35.655743 | 8 |
GCAGAGT | 24675 | 0.0 | 33.286034 | 9 |
GTACATG | 20415 | 0.0 | 29.590014 | 1 |
TACATGG | 20995 | 0.0 | 28.502527 | 2 |
ACATGGG | 21085 | 0.0 | 28.041435 | 3 |
AGAGTAC | 23870 | 0.0 | 27.531847 | 10-11 |
CATGGGG | 11330 | 0.0 | 26.561104 | 4 |
GAGTACT | 12385 | 0.0 | 26.147331 | 12-13 |
CAGAGTA | 24560 | 0.0 | 26.10453 | 10-11 |
AGTACTT | 12895 | 0.0 | 25.597477 | 12-13 |
CATGGGT | 4360 | 0.0 | 24.962616 | 4 |
ATGGGGG | 5385 | 0.0 | 23.63489 | 5 |