Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147441.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1548714 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11698 | 0.7553363629437068 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7402 | 0.47794492721057596 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6195 | 0.40000929803695195 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2083 | 0.13449868729797756 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1973 | 0.12739602018190577 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5155 | 0.0 | 51.39559 | 1 |
GTATCAA | 8810 | 0.0 | 48.927967 | 1 |
AACGCAG | 10665 | 0.0 | 40.211292 | 6 |
TATCACG | 120 | 2.0792868E-8 | 39.661263 | 2 |
TCAACGC | 11275 | 0.0 | 37.87752 | 4 |
ATCAACG | 11310 | 0.0 | 37.81656 | 3 |
TATCAAC | 11520 | 0.0 | 37.234077 | 2 |
CAACGCA | 11560 | 0.0 | 36.89224 | 5 |
ACGCAGA | 12255 | 0.0 | 34.994164 | 7 |
CGCAGAG | 12535 | 0.0 | 34.212482 | 8 |
GCAGAGT | 13145 | 0.0 | 32.760586 | 9 |
GTACATG | 11170 | 0.0 | 31.927738 | 1 |
TACATGG | 11425 | 0.0 | 30.982647 | 2 |
ACATGGG | 11630 | 0.0 | 29.870937 | 3 |
ATACCGA | 120 | 3.70517E-5 | 29.740185 | 6 |
CATGGGG | 6155 | 0.0 | 28.89461 | 4 |
GGGTTAG | 415 | 0.0 | 28.693031 | 1 |
CATGGGT | 2260 | 0.0 | 27.634686 | 4 |
ATGGGGG | 2675 | 0.0 | 27.127497 | 5 |
AGAGTAC | 13020 | 0.0 | 27.090523 | 10-11 |