FastQCFastQC Report
Fri 10 Feb 2017
ERR1147433.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147433.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2745357
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT293281.0682763662430788No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT174050.6339794788073099No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT146720.5344295842034388No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46900.1708338842635038No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46350.16883050182544565No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA28210.10275530650476422No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT28160.10257318082857712No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC28010.1020268038000158No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA95700.060.2839131
GTATCAA186650.058.468781
AACGCAG247650.044.0477036
ATCAACG254950.042.7973943
TATCAAC258600.042.3781552
TCAACGC257650.042.2688564
CAACGCA263750.041.3138125
ACGCAGA287650.037.881177
CGCAGAG291650.037.4024128
GCAGAGT306800.035.574849
GTACATG266700.035.137541
TACATGG272050.034.2689822
ACATGGG273150.033.694743
CATGGGT88650.033.3457034
GTATCGC1806.0572347E-1033.0437856
TATAACG2450.031.568812
ATGGGGG63600.031.5162855
CATGGGG130650.031.4124584
ATGGGTG44000.030.4152985
AGAGTAC303900.028.96631810-11