Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147433.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2745357 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29328 | 1.0682763662430788 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17405 | 0.6339794788073099 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14672 | 0.5344295842034388 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4690 | 0.1708338842635038 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4635 | 0.16883050182544565 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA | 2821 | 0.10275530650476422 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT | 2816 | 0.10257318082857712 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 2801 | 0.1020268038000158 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9570 | 0.0 | 60.283913 | 1 |
GTATCAA | 18665 | 0.0 | 58.46878 | 1 |
AACGCAG | 24765 | 0.0 | 44.047703 | 6 |
ATCAACG | 25495 | 0.0 | 42.797394 | 3 |
TATCAAC | 25860 | 0.0 | 42.378155 | 2 |
TCAACGC | 25765 | 0.0 | 42.268856 | 4 |
CAACGCA | 26375 | 0.0 | 41.313812 | 5 |
ACGCAGA | 28765 | 0.0 | 37.88117 | 7 |
CGCAGAG | 29165 | 0.0 | 37.402412 | 8 |
GCAGAGT | 30680 | 0.0 | 35.57484 | 9 |
GTACATG | 26670 | 0.0 | 35.13754 | 1 |
TACATGG | 27205 | 0.0 | 34.268982 | 2 |
ACATGGG | 27315 | 0.0 | 33.69474 | 3 |
CATGGGT | 8865 | 0.0 | 33.345703 | 4 |
GTATCGC | 180 | 6.0572347E-10 | 33.043785 | 6 |
TATAACG | 245 | 0.0 | 31.56881 | 2 |
ATGGGGG | 6360 | 0.0 | 31.516285 | 5 |
CATGGGG | 13065 | 0.0 | 31.412458 | 4 |
ATGGGTG | 4400 | 0.0 | 30.415298 | 5 |
AGAGTAC | 30390 | 0.0 | 28.966318 | 10-11 |