Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147428.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2421242 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31415 | 1.297474601877879 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17628 | 0.7280560968296437 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15986 | 0.6602396621238191 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4905 | 0.20258198065290456 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4764 | 0.19675852310508407 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3126 | 0.1291072928687013 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2858 | 0.11803859341610629 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 2749 | 0.1135367716238195 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 21060 | 0.0 | 54.45864 | 1 |
GGTATCA | 11275 | 0.0 | 51.46731 | 1 |
AACGCAG | 26380 | 0.0 | 43.35268 | 6 |
TATCAAC | 28055 | 0.0 | 40.833 | 2 |
ATCAACG | 28365 | 0.0 | 40.34397 | 3 |
TCAACGC | 28665 | 0.0 | 39.917614 | 4 |
CAACGCA | 29390 | 0.0 | 38.953156 | 5 |
ACGCAGA | 30670 | 0.0 | 37.249893 | 7 |
CGCAGAG | 31030 | 0.0 | 36.87523 | 8 |
GCAGAGT | 32535 | 0.0 | 35.297417 | 9 |
ATGGGGG | 6330 | 0.0 | 33.634953 | 5 |
GTACATG | 25975 | 0.0 | 33.61383 | 1 |
TACATGG | 26405 | 0.0 | 33.112843 | 2 |
ACATGGG | 26445 | 0.0 | 32.567265 | 3 |
CATGGGG | 13910 | 0.0 | 32.32259 | 4 |
TATAACG | 260 | 0.0 | 32.027275 | 2 |
CATGGGT | 6945 | 0.0 | 31.34154 | 4 |
ATGGGTG | 3945 | 0.0 | 30.602755 | 5 |
GCGTATC | 185 | 2.8639988E-8 | 28.954376 | 1 |
AGAGTAC | 32330 | 0.0 | 28.898943 | 10-11 |