FastQCFastQC Report
Fri 10 Feb 2017
ERR1147428.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147428.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2421242
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT314151.297474601877879No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT176280.7280560968296437No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT159860.6602396621238191No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49050.20258198065290456No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47640.19675852310508407No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31260.1291072928687013No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28580.11803859341610629No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC27490.1135367716238195No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA210600.054.458641
GGTATCA112750.051.467311
AACGCAG263800.043.352686
TATCAAC280550.040.8332
ATCAACG283650.040.343973
TCAACGC286650.039.9176144
CAACGCA293900.038.9531565
ACGCAGA306700.037.2498937
CGCAGAG310300.036.875238
GCAGAGT325350.035.2974179
ATGGGGG63300.033.6349535
GTACATG259750.033.613831
TACATGG264050.033.1128432
ACATGGG264450.032.5672653
CATGGGG139100.032.322594
TATAACG2600.032.0272752
CATGGGT69450.031.341544
ATGGGTG39450.030.6027555
GCGTATC1852.8639988E-828.9543761
AGAGTAC323300.028.89894310-11