Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147410.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2460614 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11127 | 0.45220420594209415 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6221 | 0.2528230758664301 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5933 | 0.24111868013430796 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT | 3056 | 0.12419664360196277 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT | 2597 | 0.1055427629038931 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA | 2489 | 0.10115361450434729 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3705 | 0.0 | 63.704582 | 1 |
GTATCAA | 7605 | 0.0 | 60.42531 | 1 |
TCAACGC | 10515 | 0.0 | 43.223255 | 4 |
ATCAACG | 10740 | 0.0 | 42.37313 | 3 |
AACGCAG | 10760 | 0.0 | 42.183792 | 6 |
CAACGCA | 10810 | 0.0 | 42.043713 | 5 |
TATCAAC | 11890 | 0.0 | 38.5767 | 2 |
ACGCAGA | 12430 | 0.0 | 36.56416 | 7 |
CGCAGAG | 12865 | 0.0 | 35.327827 | 8 |
GTACATG | 13175 | 0.0 | 34.7888 | 1 |
TACATGG | 13560 | 0.0 | 33.693947 | 2 |
GCAGAGT | 13785 | 0.0 | 33.27216 | 9 |
ACATGGG | 13600 | 0.0 | 33.2436 | 3 |
CATGGGT | 4675 | 0.0 | 31.557562 | 4 |
CATGGGG | 6815 | 0.0 | 28.631319 | 4 |
AGAGTAC | 13360 | 0.0 | 27.65149 | 10-11 |
ATGGGTG | 2595 | 0.0 | 26.592184 | 5 |
GCGTATC | 135 | 8.154004E-5 | 26.489954 | 1 |
CAGAGTA | 13740 | 0.0 | 25.349743 | 10-11 |
GTAAGTA | 1050 | 0.0 | 24.394695 | 2 |