Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147391.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 475876 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3515 | 0.7386377964007431 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2039 | 0.42847296354512515 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1926 | 0.4047272818969648 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 670 | 0.14079297968378315 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 651 | 0.13680034294648186 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 505 | 0.10612008170195597 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2745 | 0.0 | 49.25592 | 1 |
GGTATCA | 1555 | 0.0 | 49.029163 | 1 |
AACGCAG | 3575 | 0.0 | 36.92894 | 6 |
TATCAAC | 3790 | 0.0 | 35.4915 | 2 |
ATCAACG | 3790 | 0.0 | 35.461666 | 3 |
TCAACGC | 3815 | 0.0 | 35.229282 | 4 |
CAACGCA | 3890 | 0.0 | 34.2443 | 5 |
ACGCAGA | 4150 | 0.0 | 31.812277 | 7 |
CGCAGAG | 4185 | 0.0 | 31.546225 | 8 |
CGCATGT | 80 | 0.0053728 | 29.734447 | 7 |
GTACATG | 3860 | 0.0 | 29.318464 | 1 |
GCAGAGT | 4540 | 0.0 | 29.079506 | 9 |
TACATGG | 3915 | 0.0 | 28.885303 | 2 |
CATGGGG | 1695 | 0.0 | 28.418764 | 4 |
ATGGGGG | 825 | 0.0 | 28.11257 | 5 |
ACATGGG | 3815 | 0.0 | 28.058722 | 3 |
GTATAGC | 130 | 6.3249354E-5 | 27.490513 | 1 |
GAGCTTA | 130 | 6.39326E-5 | 27.447184 | 6 |
TGCACTA | 90 | 0.009547761 | 26.430622 | 5 |
AGAGTAC | 4445 | 0.0 | 26.42319 | 10-11 |