Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147383.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4663817 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16483 | 0.3534229580620337 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8871 | 0.1902090069142936 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8742 | 0.1874430321772917 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 12940 | 0.0 | 52.643085 | 1 |
GGTATCA | 6790 | 0.0 | 45.55405 | 1 |
AACGCAG | 16125 | 0.0 | 41.831985 | 6 |
TCAACGC | 16905 | 0.0 | 39.831474 | 4 |
ATCAACG | 17140 | 0.0 | 39.250656 | 3 |
CAACGCA | 17310 | 0.0 | 38.865177 | 5 |
ACGCAGA | 18780 | 0.0 | 35.886364 | 7 |
TATCAAC | 19040 | 0.0 | 35.476242 | 2 |
CGCAGAG | 19305 | 0.0 | 34.879623 | 8 |
GTACATG | 19985 | 0.0 | 33.36993 | 1 |
GCAGAGT | 21545 | 0.0 | 31.418896 | 9 |
ACATGGG | 20455 | 0.0 | 31.290173 | 3 |
TACATGG | 21180 | 0.0 | 31.076197 | 2 |
CATGGGG | 11280 | 0.0 | 27.737785 | 4 |
AGAGTAC | 20430 | 0.0 | 27.368732 | 10-11 |
CATGGGT | 5115 | 0.0 | 26.86343 | 4 |
ATGGGGG | 5540 | 0.0 | 26.73528 | 5 |
CAGAGTA | 21465 | 0.0 | 23.000769 | 10-11 |
GAGTACT | 10365 | 0.0 | 22.61112 | 12-13 |
AGTACTT | 12125 | 0.0 | 21.953634 | 12-13 |