Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147380.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4767830 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10707 | 0.22456757057193735 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6319 | 0.1325340878345075 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5734 | 0.12026435506299511 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 11100 | 0.0 | 49.340313 | 1 |
GGTATCA | 5730 | 0.0 | 47.94636 | 1 |
AACGCAG | 13700 | 0.0 | 39.46599 | 6 |
TCAACGC | 13805 | 0.0 | 39.036552 | 4 |
CAACGCA | 14210 | 0.0 | 37.88211 | 5 |
ATCAACG | 14525 | 0.0 | 37.265327 | 3 |
GTACATG | 19305 | 0.0 | 35.7477 | 1 |
ACATGGG | 19515 | 0.0 | 34.411613 | 3 |
ACGCAGA | 15880 | 0.0 | 33.973198 | 7 |
TACATGG | 20405 | 0.0 | 33.681835 | 2 |
TATCAAC | 16305 | 0.0 | 33.49462 | 2 |
CGCAGAG | 16440 | 0.0 | 32.888325 | 8 |
CATGGGT | 6795 | 0.0 | 31.775824 | 4 |
CATGGGG | 8680 | 0.0 | 30.425861 | 4 |
ATGGGGG | 4180 | 0.0 | 30.167494 | 5 |
GCAGAGT | 18420 | 0.0 | 29.320805 | 9 |
AGAGTAC | 17745 | 0.0 | 26.665138 | 10-11 |
TAATACT | 4095 | 0.0 | 24.112032 | 4 |
ATGGGTG | 4255 | 0.0 | 23.764519 | 5 |
TGGGGGG | 3695 | 0.0 | 22.53685 | 6 |