FastQCFastQC Report
Fri 10 Feb 2017
ERR1147380.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147380.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4767830
Sequences flagged as poor quality0
Sequence length125
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT107070.22456757057193735No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63190.1325340878345075No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57340.12026435506299511No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA111000.049.3403131
GGTATCA57300.047.946361
AACGCAG137000.039.465996
TCAACGC138050.039.0365524
CAACGCA142100.037.882115
ATCAACG145250.037.2653273
GTACATG193050.035.74771
ACATGGG195150.034.4116133
ACGCAGA158800.033.9731987
TACATGG204050.033.6818352
TATCAAC163050.033.494622
CGCAGAG164400.032.8883258
CATGGGT67950.031.7758244
CATGGGG86800.030.4258614
ATGGGGG41800.030.1674945
GCAGAGT184200.029.3208059
AGAGTAC177450.026.66513810-11
TAATACT40950.024.1120324
ATGGGTG42550.023.7645195
TGGGGGG36950.022.536856