FastQCFastQC Report
Fri 10 Feb 2017
ERR1147369.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147369.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1020181
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43300.4244344876056308No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33490.3282750805984428No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22090.21653020395400424No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA27150.051.1273421
GTATCAA44000.043.3275761
AACGCAG54350.035.025036
TCAACGC57150.033.3090134
ATCAACG57400.033.0603073
CAACGCA59550.031.9665855
TATCAAC61100.030.8847582
ACGCAGA64650.029.2608327
CGCAGAG66400.028.7584178
GTACATG62600.027.6940041
GTATTAC2404.292815E-1027.30541
GCAGAGT70400.027.0399199
TACATGG64900.026.691592
ACATGGG65250.026.2566933
GTAATAC1651.1114344E-525.2372593
CATGGGG34950.025.0206284
AGCGTCA2651.380613E-924.6930583
CAGAGTA70700.023.3491810-11
CATGGGT14450.023.0541044
AGAGTAC69150.022.92625210-11