Basic Statistics
Measure | Value |
---|---|
Filename | ERR1147369.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1020181 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4330 | 0.4244344876056308 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3349 | 0.3282750805984428 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2209 | 0.21653020395400424 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2715 | 0.0 | 51.127342 | 1 |
GTATCAA | 4400 | 0.0 | 43.327576 | 1 |
AACGCAG | 5435 | 0.0 | 35.02503 | 6 |
TCAACGC | 5715 | 0.0 | 33.309013 | 4 |
ATCAACG | 5740 | 0.0 | 33.060307 | 3 |
CAACGCA | 5955 | 0.0 | 31.966585 | 5 |
TATCAAC | 6110 | 0.0 | 30.884758 | 2 |
ACGCAGA | 6465 | 0.0 | 29.260832 | 7 |
CGCAGAG | 6640 | 0.0 | 28.758417 | 8 |
GTACATG | 6260 | 0.0 | 27.694004 | 1 |
GTATTAC | 240 | 4.292815E-10 | 27.3054 | 1 |
GCAGAGT | 7040 | 0.0 | 27.039919 | 9 |
TACATGG | 6490 | 0.0 | 26.69159 | 2 |
ACATGGG | 6525 | 0.0 | 26.256693 | 3 |
GTAATAC | 165 | 1.1114344E-5 | 25.237259 | 3 |
CATGGGG | 3495 | 0.0 | 25.020628 | 4 |
AGCGTCA | 265 | 1.380613E-9 | 24.693058 | 3 |
CAGAGTA | 7070 | 0.0 | 23.34918 | 10-11 |
CATGGGT | 1445 | 0.0 | 23.054104 | 4 |
AGAGTAC | 6915 | 0.0 | 22.926252 | 10-11 |