FastQCFastQC Report
Fri 10 Feb 2017
ERR1147354.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1147354.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4216982
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT108360.25696102093867135No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57770.13699370782232412No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53230.1262277145124167No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA103000.059.7545781
GGTATCA50500.049.7885171
TCAACGC137250.044.463234
AACGCAG140750.043.5266046
ATCAACG140850.043.4534723
CAACGCA140950.043.3382455
TATCAAC162800.037.7807352
ACGCAGA165450.036.9925777
GTACATG201000.036.3414731
CGCAGAG172400.035.5702868
TACATGG210800.034.318652
ACATGGG211850.033.579073
GCAGAGT190550.032.275849
CATGGGT67200.031.6868974
CATGGGG107800.027.974044
AGAGTAC177450.026.2620710-11
CAGAGTA186250.023.28076410-11
ATGGGGG48800.023.157935
ATGGGTG37700.022.718895
ATGGGTA33300.022.327075