FastQCFastQC Report
Sun 1 Jan 2017
ERR1143040_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1143040_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2391
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.37641154328732745No Hit
CTTCTTGGCCGCCTGGCGGCCATTGTGGCCAAGCAGGTACTTCTGGGCCG80.3345880384776244No Hit
GTTTTGGTTGTAAGAAAGGCGGTCATTTCTCCAGGCGATCGCGGCGAGGT70.2927645336679214No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.2509410288582183No Hit
GATAAGAACCCTCCAGCTCGGGGCCTCAAACCGATATTCCATGTGGGCCA50.20911752404851527No Hit
CTATAAGGGCCTAGTACCTTTCGAGCCCCGCGCGTACTAGGCAGATAAGA50.20911752404851527No Hit
CCTTAATGGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTC50.20911752404851527No Hit
CTTACACACCGGACGCTTGGATCAGTGGGAAGTGCTCACGCGCGGAGCCC40.1672940192388122No Hit
GTGCTCACGCGCGGAGCCCACTGGGCGAACAGCAACGTTATAACGGCCAC40.1672940192388122No Hit
ACTCAGTGGTTCGTCACGCGCAGCCCCGGGTTCGTCCCCTATAAGGGCCT40.1672940192388122No Hit
CCCTATAAGGGCCTAGTACCTTTCGAGCCCCGCGCGTACTAGGCAGATAA40.1672940192388122No Hit
GTATAGGAAGACGCTGGGTTGGTCCGATACTATTTACACGTGGTGGCAGC40.1672940192388122No Hit
ATTTCTTAAAGAATTGAGTACAAAAAACCTTACATAAATTAAAGAATGAA40.1672940192388122No Hit
GCCCCGGGTTCGTCCCCTATAAGGGCCTAGTACCTTTCGAGCCCCGCGCG40.1672940192388122No Hit
GGGTTTATTGTACACGAGCTACACTTGGCCACAAGAGAACAGAGCTAGTC40.1672940192388122No Hit
GTTTCTCCAGAGCTGGGTTGTTCTCCAGGTGGCCCCTGATAGCCTTGCGC30.12547051442910914No Hit
CCCCCAGCCATGGTGCCCAGAAGGTACGGGTTGATCTCTATTACTTTCTT30.12547051442910914No Hit
CTTCAGGGTTATAAATGCTGCCGTTGTCAAACACCTGCTGGATGATCAGC30.12547051442910914No Hit
TCTCTAGCATGTCCACCTGCTCAATTTCCATGAGCAGGTCACAAGCCTCG30.12547051442910914No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC30.12547051442910914No Hit
GCCTAGTACCTTTCGAGCCCCGCGCGTACTAGGCAGATAAGAACCCTCCA30.12547051442910914No Hit
GTATATGAGCTACCGAGTCGTTCTGATAGATCCCGCGTCAGGCATATAAT30.12547051442910914No Hit
CATCTCGACGATCTTACATGGCCGGCCTTTGAGCACCACAAAACCATTCT30.12547051442910914No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.12547051442910914No Hit
GGGCAGAGGGACTGTTTTGGTTGTAAGAAAGGCGGTCATTTCTCCAGGCG30.12547051442910914No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)