ERR1142916_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1142916_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	104235
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1180	1.1320573703650405	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1098	1.0533889768311988	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	667	0.6399002254521035	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	474	0.45474168945171967	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	358	0.3434546937209191	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	333	0.31947042739962583	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	315	0.3022017556482947	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT	224	0.21489902623878734	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	193	0.18515853600038376	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC	159	0.15253993380342495	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC	157	0.1506211924977215	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	155	0.14870245119201803	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT	153	0.1467837098863146	No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC	145	0.13910874466350073	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	141	0.13527126205209383	No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC	139	0.13335252074639037	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	139	0.13335252074639037	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	138	0.13239315009353864	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	132	0.12663692617642827	No Hit
CTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122	0.11704321964791098	No Hit
GTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTAGGGCTGAA	121	0.11608384899505925	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	119	0.11416510768935577	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	119	0.11416510768935577	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	117	0.11224636638365233	No Hit
GTACATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	117	0.11224636638365233	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	111	0.10649014246654194	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	108	0.10361203050798676	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGGG	25	0.002051586	71.4	1
TTGATGT	30	0.004225763	59.500004	4
ACGCAAG	30	0.004225763	59.500004	8
GTCACGT	15	0.0042316928	59.500004	92-93
AGACAAG	30	0.004225763	59.500004	6
CTACATG	30	0.004225763	59.500004	1
CGAGATA	15	0.0042316928	59.500004	96-97
CTATAAG	35	0.007776488	51.000004	1
ATTGCCT	35	0.007776488	51.000004	8
GGGGGCT	50	5.31017E-4	47.600002	8
ATGGGGC	60	0.0013030465	39.666668	5
CCGCAGA	175	1.0913936E-11	37.399998	1
CATGGGG	495	0.0	34.858585	4
GGGGGGC	70	0.0027774198	34.000004	7
TGGGGGG	245	0.0	34.0	6
GGATGGT	45	2.3863086E-4	33.055553	48-49
GTACTGT	110	2.0221285E-5	32.454544	6
ATGGGGG	410	0.0	31.92683	5
GTTCAAC	95	3.2660094E-4	31.315788	1
ACTGTGC	115	2.740125E-5	31.043478	8

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content