ERR1142841_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1142841_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	106672
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	940	0.8812059397030149	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	874	0.8193340332983351	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	539	0.5052872356382181	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	388	0.36373181340932953	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	294	0.27561121943902805	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	291	0.27279886005699716	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	279	0.26154942252887353	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	258	0.24186290685465728	No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT	249	0.23342582870856457	No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC	197	0.18467826608669566	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	194	0.18186590670466476	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC	155	0.1453052347382631	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	151	0.14155542222888856	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	147	0.13780560971951403	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	139	0.13030598470076496	No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT	139	0.13030598470076496	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	137	0.1284310784460777	No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC	135	0.12655617219139043	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT	133	0.12468126593670316	No Hit
GAGTAGGGATGAGCATAAACCAACAACTCTCAAAGAAGATGGGAAGCTAT	131	0.12280635968201589	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	124	0.11624418779061048	No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG	123	0.11530673466326684	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	123	0.11530673466326684	No Hit
GTACATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	119	0.11155692215389232	No Hit
GTGCTGGGGTTATGAGTAGGGATGAGCATAAACCAACAACTCTCAAAGAA	117	0.10968201589920502	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	117	0.10968201589920502	No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC	112	0.10499475026248686	No Hit
GTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTAGGGCTGAA	111	0.10405729713514325	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	111	0.10405729713514325	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGCTAC	25	0.0020520717	71.39691	1
AGTGCGT	25	0.0020520717	71.39691	8
GGGTAAA	35	9.116442E-5	67.997055	1
GTCAACG	70	1.72804E-10	67.997055	1
AACGCAA	45	3.965153E-6	66.108246	7
ACGCAAG	50	7.407807E-6	59.497425	8
CTACTAT	15	0.0042325556	59.49742	44-45
GCTTGTA	30	0.004226761	59.49742	1
AGTGTAC	30	0.004226761	59.49742	3
TAATCTA	15	0.0042325556	59.49742	90-91
GCGCAGA	80	5.657057E-10	59.497417	1
GTACAAG	45	3.158557E-4	52.8866	1
TTCAACG	45	3.158557E-4	52.8866	4
CTATAAG	35	0.0077783205	50.99779	1
TTCGTAC	35	0.0077783205	50.99779	3
AAGCACC	30	2.1878874E-5	49.581184	12-13
GTGTTAT	55	8.495384E-4	43.270855	1
AAAACGC	60	0.0013034623	39.664948	5
GTAAAAC	60	0.0013034623	39.664948	3
GGTAAAA	65	0.0019314445	36.6138	2

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content