ERR1142535_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1142535_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23525
Sequences flagged as poor quality	0
Sequence length	125
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	97	0.412327311370882	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63	0.26780021253985126	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55	0.23379383634431458	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	40	0.17003188097768332	No Hit
GCTGCTAGCTGGAGCCACCCGCAGTTCGAAAAAGTGAGCAAGGGCGAGGA	35	0.1487778958554729	No Hit
GTACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG	33	0.14027630180658873	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	29	0.1232731137088204	No Hit
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	27	0.11477151965993623	No Hit
GGTATCAACGCAGAGTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTC	26	0.11052072263549415	No Hit
GGTATCAACGCAGAGTACATGGGACTGCTCCTCGCCCTTGCTCACTTTTT	26	0.11052072263549415	No Hit
GTACATGGGACTGCTGCTAGCTCCTCGCCCTTGCTCACTTTTTCGAACTG	24	0.10201912858660998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGGGGC	20	8.382895E-4	89.2339	6
GTACAAA	55	1.8189894E-11	86.715935	1
AGCCTAA	20	1.7372804E-4	59.617203	24-25
AACGAGG	15	0.0041783806	59.617203	30-31
CCTAACG	20	1.7372804E-4	59.617203	26-27
ACACACG	15	0.004250115	59.36188	86-87
TACAAAA	90	1.4879333E-9	52.993073	2
GGCAAGC	25	5.2286853E-4	47.693764	20-21
GTAACAA	95	1.3835961E-7	43.928467	1
AAACATG	80	3.6379788E-12	40.986828	14-15
CACAAAG	60	0.0012699153	39.7448	8
ACAACAC	135	1.1878001E-9	39.7448	5
TCAACAC	110	4.3735236E-7	37.93822	4
TAACAAC	65	0.0018818693	36.68751	2
CAGAGAA	50	1.0265163E-5	35.770325	10-11
TTTTGTG	35	0.0027351724	34.06697	24-25
AGAACAT	35	0.0027351724	34.06697	12-13
ACACAGA	70	0.0027071838	34.06697	8
GGGGGCT	70	0.0027071838	34.06697	7
CATGGGT	70	0.0027071838	34.06697	4